mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.2% | 90.9 / 47.8 | 77 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,917,396 | 0 | A | T | 25.5% | 81.9 / 10.4 | 47 | intergenic (‑21/+6) | atpD/atpG | ATP synthase F1 complex subunit beta/ATP synthase F1 complex subunit gamma |
| * | NC_000913 | 3,917,405 | 0 | A | T | 21.1% | 112.6 / 10.2 | 52 | V287V (GTT→GTA) | atpG | ATP synthase F1 complex subunit gamma |
| Marginal new junction evidence (lowest skew 10 of 160 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 570695 = | 5070 (73.290) | 68 (1.030) | 31/268 | 1.4 | 1.4% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 4535 (69.010) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568559 = | 4397 (63.560) | 77 (1.160) | 25/270 | 2.3 | 1.8% | coding (245/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568576 = | 4019 (60.700) | coding (262/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 572471 | 76 (1.100) | 25 (0.480) +34 bp |
14/214 | 3.5 | 36.9% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 37 (0.530) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 572471 | 76 (1.100) | 25 (0.480) +34 bp |
14/214 | 3.5 | 35.3% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | 1095438 = | 45 (0.650) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 572405 = | 2137 (30.890) | 20 (0.370) +31 bp |
13/220 | 3.9 | 1.2% | coding (38/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 1095504 | NA (NA) | intergenic (‑67/‑40) | insE‑4/ymdE | IS3 element protein InsE/protein YmdE | |||||
| * | ? | NC_000913 | = 570701 | 4774 (69.010) | 34 (0.520) | 17/268 | 4.0 | 0.74% | intergenic (+273/‑192) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570711 | 4535 (69.010) | intergenic (+283/‑182) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 566841 | 41 (0.590) | 16 (0.310) +34 bp |
11/214 | 4.4 | 26.5% | noncoding (65/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 76 (1.100) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | 392902 = | 37 (0.530) | 16 (0.310) +34 bp |
11/214 | 4.4 | 27.2% | noncoding (65/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 76 (1.100) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | = 315290 | 33 (0.480) | 16 (0.310) +34 bp |
11/214 | 4.4 | 27.9% | noncoding (62/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 76 (1.100) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | 568556 = | 4349 (62.870) | 18 (0.260) | 16/278 | 4.5 | 0.43% | coding (242/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568579 = | 3964 (58.130) | coding (265/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||