mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.5% | 402.8 / 171.9 | 240 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,781,152 | 0 | A | G | 20.3% | 268.9 / 20.1 | 125 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase |
| Marginal new junction evidence (lowest skew 10 of 816 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 569159 | 8677 (46.200) | 290 (1.750) | 53/164 | 4.8 | 3.6% | coding (258/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 569161 | 7663 (46.280) | coding (260/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 569149 = | 8523 (45.380) | 263 (1.590) | 51/164 | 5.2 | 3.4% | coding (248/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | 569173 = | 7450 (44.990) | coding (272/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 568678 = | 9958 (53.030) | 149 (0.860) | 48/172 | 6.6 | 1.6% | intergenic (+31/‑17) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | 568704 = | 9120 (52.520) | coding (10/150 nt) | ylcJ | protein YlcJ | |||||
| * | ? | NC_000913 | 572316 = | 8308 (44.240) | 198 (1.180) | 43/166 | 7.4 | 2.7% | intergenic (+65/‑52) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | 572345 = | 6996 (41.740) | intergenic (+94/‑23) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 572325 | 8289 (44.140) | 113 (0.670) | 37/166 | 9.2 | 1.5% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 6998 (41.750) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 568556 = | 8239 (43.870) | 94 (0.510) | 40/182 | 9.8 | 1.1% | coding (242/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568579 = | 8224 (44.750) | coding (265/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 568684 | 10044 (53.480) | 124 (0.710) | 34/172 | 10.9 | 1.3% | intergenic (+37/‑11) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | = 568696 | 9184 (52.880) | coding (2/150 nt) | ylcJ | protein YlcJ | |||||
| * | ? | NC_000913 | 568265 = | 8218 (43.760) | 99 (0.590) | 30/166 | 11.8 | 1.3% | intergenic (+18/‑50) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568300 = | 7722 (46.070) | intergenic (+53/‑15) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 572471 | 150 (0.800) | 56 (0.470) +34 bp |
16/118 | 12.6 | 47.4% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 46 (0.240) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 572471 | 150 (0.800) | 56 (0.470) +34 bp |
16/118 | 12.6 | 46.6% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | 1095438 = | 52 (0.280) | noncoding (65/1258 nt) | IS3 | repeat region | |||||