| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,380 | 1 | . | C | 98.2% | 109.2 / ‑4.7 | 58 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base . (0/1); major base C (33/23); minor base T (1/0); total (34/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
| * | NC_000913 | 4,296,380 | 2 | . | G | 98.3% | 113.7 / ‑3.1 | 58 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (34/23); total (34/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTA‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCAC > NC_000913/4296342‑4296467 || cTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTaa > 1:6293136/1‑100 (MQ=1) gATTTAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAcc < 1:3682610/100‑1 (MQ=11) aTTTAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACACTTGCCGCGTCTTATCAGGCCTATCTTAACCg < 1:3555209/100‑1 (MQ=11) ttAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGtt < 1:3749665/100‑1 (MQ=11) tAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg < 1:82929/100‑1 (MQ=11) aGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgg < 1:1545772/100‑1 (MQ=11) gCGTGATTTTCTCGGTAGGACAAGCCGTCCATG‑‑CCGGATCCTACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCt < 2:4773120/89‑1 (MQ=2) gTGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa > 1:716504/1‑100 (MQ=14) tGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGTGACGCTTGCCGCGTCTTATCAGGCCTATCTTaa > 2:1411109/1‑89 (MQ=1) tGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTaa < 2:1987739/89‑1 (MQ=11) tGATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTaa > 1:228166/1‑100 (MQ=14) gATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAc > 2:5729620/1‑89 (MQ=11) gATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAc > 2:5841814/1‑89 (MQ=11) gATTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAt > 1:2511492/1‑100 (MQ=14) aTTTTGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAcc > 2:5556004/1‑89 (MQ=11) ttttGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCg > 2:5199365/1‑89 (MQ=11) ttttGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAttt > 1:3446066/1‑100 (MQ=14) tttGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCGGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtttt < 1:6385610/100‑1 (MQ=14) ttGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGtt > 2:3029077/1‑89 (MQ=11) tGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg > 2:3808039/1‑89 (MQ=11) tGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg > 2:755368/1‑89 (MQ=11) tGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc < 1:6108075/100‑1 (MQ=17) tGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc > 1:519016/1‑100 (MQ=17) tGTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc < 1:5760213/100‑1 (MQ=17) gTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgg < 2:3977885/89‑1 (MQ=14) gTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCa > 1:101452/1‑100 (MQ=17) gTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCa < 1:3008995/100‑1 (MQ=17) gTAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCa < 1:3792957/100‑1 (MQ=17) tAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 1:6216306/100‑1 (MQ=17) tAGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 1:4727813/100‑1 (MQ=17) aGGTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGtt > 2:3218842/1‑89 (MQ=14) ggTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa > 2:1231973/1‑89 (MQ=14) ggTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa > 2:4491640/1‑89 (MQ=14) ggTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc > 1:5944272/1‑100 (MQ=17) gTCGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTaa > 2:2191765/1‑89 (MQ=14) catctAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActct < 1:5822805/96‑1 (MQ=18) cGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtt > 2:50082/1‑89 (MQ=14) cGGATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActct < 1:629627/100‑1 (MQ=18) ggATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAttt > 2:5877984/1‑89 (MQ=17) ggATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCtt > 1:4385681/1‑100 (MQ=18) gATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtttt > 2:5160994/1‑89 (MQ=17) gATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtttt > 2:3792749/1‑89 (MQ=17) gATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc > 1:5476129/1‑100 (MQ=18) gATAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc < 1:599310/100‑1 (MQ=18) aTAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAttttt < 2:1490384/89‑1 (MQ=17) aTAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTca < 1:4203252/100‑1 (MQ=18) tAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc < 2:5640701/89‑1 (MQ=17) tAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc > 2:1127663/1‑89 (MQ=17) tAAGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTcac > 1:1854255/1‑100 (MQ=18) aaGGCGT‑‑TTATGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCa > 2:5822805/1‑89 (MQ=18) aaGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCa < 2:132724/89‑1 (MQ=17) aGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa > 2:1205406/1‑89 (MQ=17) aGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa > 2:4662102/1‑89 (MQ=17) aGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa > 2:3724963/1‑89 (MQ=17) aGGCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa > 2:3157106/1‑89 (MQ=17) aGGCGT‑‑TTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 2:3450108/89‑1 (MQ=14) ggCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa < 2:4964643/89‑1 (MQ=18) ggCGT‑‑TTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa > 2:4092372/1‑89 (MQ=17) || CTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGT‑‑TTA‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCAC > NC_000913/4296342‑4296467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |