Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,308,6350TC31.6% 276.1 / 202.7 215E97G (GAA→GGA) nlpIlipoprotein NlpI
Reads supporting (aligned to +/- strand):  ref base T (79/68);  new base C (30/38);  total (109/106)
Fisher's exact test for biased strand distribution p-value = 2.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.65e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 220 total aligned reads displayed.

GTAAGTTGGATCAAGCTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCATATAAA  >  NC_000913/3308538‑3308733
                                                                                                 |                                                                                                  
 tAAGTTGGATCAAGCTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAg                                                                                                 <  1:4823622/100‑1 (MQ=255)
       ggATCAAGCTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCatat                                                                                           >  1:5677411/1‑100 (MQ=255)
         aTCAAGCTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATcc                                                                                         >  1:5219647/1‑100 (MQ=255)
         aTCAAGCTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATcc                                                                                         <  1:3599570/100‑1 (MQ=255)
           cAAGCTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCa                                                                                                  >  2:310764/1‑89 (MQ=255)
           cAAGCTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCa                                                                                                  >  2:815578/1‑89 (MQ=255)
             aGCTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTc                                                                                     <  1:3011202/100‑1 (MQ=255)
              gCTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCg                                                                                    <  1:1776047/100‑1 (MQ=255)
              gCTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCg                                                                                    <  1:5376214/100‑1 (MQ=255)
               cTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCgg                                                                                   >  1:3043873/1‑100 (MQ=255)
               cTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCgg                                                                                   <  1:2220959/100‑1 (MQ=255)
               cTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCgg                                                                                   >  1:4002748/1‑100 (MQ=255)
                 cAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCata                                                                                            <  2:4460972/89‑1 (MQ=255)
                  aaGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGAtt                                                                                <  1:1068961/100‑1 (MQ=255)
                   aGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTg                                                                               >  1:4905313/1‑100 (MQ=255)
                    gTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGc                                                                              <  1:1001695/100‑1 (MQ=255)
                    gTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATACATGCCTAAGTAATTGAATACTCCAGGCATATcc                                                                                         <  2:4895491/89‑1 (MQ=255)
                      aCAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCgg                                                                                       >  2:4013413/1‑89 (MQ=255)
                       cAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGt                                                                                      >  2:1670663/1‑89 (MQ=255)
                       cAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAg                                                                           <  1:3527940/100‑1 (MQ=255)
                         gAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCg                                                                                    <  2:513169/89‑1 (MQ=255)
                         gAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCg                                                                                    >  2:568132/1‑89 (MQ=255)
                         gAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCg                                                                                    >  2:2278075/1‑89 (MQ=255)
                          aaTCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAgcgc                                                                        <  1:815578/100‑1 (MQ=255)
                           aTCACACGCTTCATAGGCAGCATCCAAATTGCCTCCCTCCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATCTCCGGTCGGa                                                                                  >  2:190689/1‑89 (MQ=255)
                           aTCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGCTAAATATATGCCTAAGTAATAGAATACTTCAGGCATATCGGGACGGa                                                                                  >  2:3395330/1‑89 (MQ=255)
                            tCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGAt                                                                                 <  2:572742/89‑1 (MQ=255)
                             cAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGAtt                                                                                <  2:1979148/89‑1 (MQ=255)
                             cAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTg                                                                     >  1:268041/1‑100 (MQ=255)
                              aaaCGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGc                                                                    <  1:4582620/100‑1 (MQ=255)
                                 cGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGaa                                                                 <  1:2887790/100‑1 (MQ=255)
                                   cTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAgc                                                                          >  2:1191099/1‑89 (MQ=255)
                                   cTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGaaaa                                                               >  1:1659407/1‑100 (MQ=255)
                                   cTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGaaaa                                                               <  1:3462578/100‑1 (MQ=255)
                                    ttCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGaaaaa                                                              <  1:310764/100‑1 (MQ=255)
                                     tCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAgcgc                                                                        <  2:2012280/89‑1 (MQ=255)
                                       aTAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCg                                                           <  1:3778378/100‑1 (MQ=255)
                                        tAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTg                                                                     >  2:518660/1‑89 (MQ=255)
                                        tAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGt                                                          >  1:1492548/1‑100 (MQ=255)
                                          ggCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTa                                                        >  1:3908195/1‑100 (MQ=255)
                                           gcagcaTCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTAc                                                       <  1:2283419/100‑1 (MQ=255)
                                            cagcaTCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGaa                                                                 <  2:1577804/89‑1 (MQ=255)
                                             agcaTCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTAcgc                                                     >  1:1354330/1‑100 (MQ=255)
                                                 tCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTa                                                 >  1:980861/1‑100 (MQ=255)
                                                 tCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTa                                                 >  1:6195999/1‑100 (MQ=255)
                                                 tCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTa                                                 <  1:174215/100‑1 (MQ=255)
                                                  cAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCg                                                           <  2:5513426/89‑1 (MQ=255)
                                                   aaaaTTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAAt                                               >  1:3493372/1‑100 (MQ=255)
                                                     aaTTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTa                                                        <  2:3925466/89‑1 (MQ=255)
                                                         gcctgcctGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTc                                         <  1:5905992/100‑1 (MQ=255)
                                                          cctgcctgCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACgcgc                                                   >  2:5261937/1‑89 (MQ=255)
                                                          cctgcctgCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACgcgc                                                   >  2:2686926/1‑89 (MQ=255)
                                                          cctgcctgCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACgcgc                                                   >  2:3610311/1‑89 (MQ=255)
                                                          cctgcctgCGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCa                                        <  1:2962302/100‑1 (MQ=255)
                                                            tgcctgcGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGa                                      >  1:2647688/1‑100 (MQ=255)
                                                              cctgcGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAAt                                               >  2:3189181/1‑89 (MQ=255)
                                                              cctgcGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGAcc                                    >  1:3214410/1‑100 (MQ=255)
                                                              cctgcGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGAcc                                    <  1:735409/100‑1 (MQ=255)
                                                              cctgcGTTAAATATATGCCTAAGTAACTGAATACTCCAGGCATATCCGTTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAAt                                               <  2:3688119/89‑1 (MQ=255)
                                                               ctgcGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATg                                              >  2:793118/1‑89 (MQ=255)
                                                               ctgcGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATg                                              <  2:1455421/89‑1 (MQ=255)
                                                                tgcGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGAGAAAAATCGTTACGCGCTAATGc                                             <  2:790329/89‑1 (MQ=255)
                                                                 gcGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCgag                                 >  1:4362332/1‑100 (MQ=255)
                                                                 gcGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCgag                                 <  1:4143783/100‑1 (MQ=255)
                                                                 gcGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCgag                                 >  1:380330/1‑100 (MQ=255)
                                                                  cGTTAAATATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCGGCGCTTGCGAAAAATCGTTACGCGCTAATGccc                                           <  2:4839904/89‑1 (MQ=255)
                                                                    ttAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACt                              >  1:4096426/1‑100 (MQ=255)
                                                                      aaaTATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAg                                       <  2:242886/89‑1 (MQ=255)
                                                                      aaaTATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACACGCTAATGCCCTCAg                                       >  2:4263836/1‑89 (MQ=255)
                                                                       aaTATATGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGa                                      <  2:5059548/89‑1 (MQ=255)
                                                                           tatGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATac                       <  1:2406147/100‑1 (MQ=255)
                                                                            atGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATaca                      >  1:4487478/1‑100 (MQ=255)
                                                                            atGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATaca                      <  1:2092006/100‑1 (MQ=255)
                                                                            atGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCgag                                 <  2:29664/89‑1 (MQ=255)
                                                                             tGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATacaa                     >  1:14047/1‑100 (MQ=255)
                                                                             tGCCTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATacaa                     >  1:4950870/1‑100 (MQ=255)
                                                                                cTAAGTAATTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAacac                  >  1:2749900/1‑100 (MQ=255)
                                                                                  aaGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATc                           <  2:5281439/89‑1 (MQ=255)
                                                                                  aaGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTc                <  1:518660/100‑1 (MQ=255)
                                                                                     tAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATa                        >  2:515093/1‑89 (MQ=255)
                                                                                       aTTGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATaca                      <  2:4476343/89‑1 (MQ=255)
                                                                                        ttGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCt          <  1:6020619/100‑1 (MQ=255)
                                                                                         tGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATacaac                    >  2:6222207/1‑89 (MQ=255)
                                                                                         tGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATacaac                    <  2:6320804/89‑1 (MQ=255)
                                                                                         tGAATACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTc         <  1:5923921/100‑1 (MQ=255)
                                                                                          gAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCa        >  1:195093/1‑100 (MQ=255)
                                                                                          gAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCa        >  1:3606004/1‑100 (MQ=255)
                                                                                           aaTACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCat       <  1:5229605/100‑1 (MQ=255)
                                                                                           aaTACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCat       <  1:4701888/100‑1 (MQ=255)
                                                                                           aaTACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCat       <  1:5049647/100‑1 (MQ=255)
                                                                                           aaTACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCat       >  1:6338203/1‑100 (MQ=255)
                                                                                            aTACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCata      >  1:1624229/1‑100 (MQ=255)
                                                                                             tACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTc                <  2:4639538/89‑1 (MQ=255)
                                                                                             tACTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTc                <  2:1354330/89‑1 (MQ=255)
                                                                                              aCTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCAtata    <  1:4433640/100‑1 (MQ=255)
                                                                                              aCTCCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAGAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCAtata    >  1:6310330/1‑100 (MQ=255)
                                                                                               cTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCATATaa   >  1:239256/1‑100 (MQ=255)
                                                                                                ttCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCcgc             >  2:5036124/1‑89 (MQ=255)
                                                                                                ttCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCATATaaa  >  1:5265944/1‑100 (MQ=255)
                                                                                                ttCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCATATaaa  >  1:1575283/1‑100 (MQ=255)
                                                                                                 |                                                                                                  
GTAAGTTGGATCAAGCTCAAGTACAGAATCAAACGCTTCATAGGCAGCATCAAAATTGCCTGCCTGCGTTAAATATATGCCTAAGTAATTGAATACTTCAGGCATATCCGGTCGGATTGCCAGCGCTTGCGAAAAATCGTTACGCGCTAATGCCCTCAGACCGAGACTATCATACAACACTCCGCGCTCATATAAA  >  NC_000913/3308538‑3308733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑