New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 3955391 = | 149 (1.040) | 8 (0.060) | 6/264 | NT | 5.4% | coding (61/1545 nt) | ilvA | threonine deaminase |
? | NC_000913 | 3955421 = | 137 (1.000) | coding (91/1545 nt) | ilvA | threonine deaminase |
CCCGCCATCATGGCGTATGCGCCGCGCAGCTTAAAGCTGTGCACTGGCTGGCGATCTTCGCGCTTCACCAGAATGACGTTATCAAGACGCGACGACAGTTTTTCCATTTTTTGTAGCGGCGTAACCTGCGCCGCCTCGTAAACCGGCGCGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3955545‑3955391 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCA > NC_000913/3955421‑3955569 CCCGCCATCATGGCGTATGCGCCGCGCAGCTTAAAGCTGTGCACTGGCTGGCGATCTTCGCGCTTCACCAGAATGACGTTATCAAGACGCGACGACAGTTTTTCCATTTTTTGTAGCGGCGTAACCTGCGCCGCCTCGTAAACCGGCGCG > 2:839302/1‑150 CCGCCATCATGGCGTATGCGCCGCGCAGCTTAAAGCTGTGCACTGGCTGGCGATCTTCGCGCTTCACCAGAATGACGTTATCAAGACGCGACGACAGTTTTTCCATTTTTTGTAGCGGCGTAACCTGCGCCGCCTCGTAAACCGGCGCGC > 1:322893/1‑150 CCATCATGGCGTATGCGCCGCGCAGCTTAAAGCTGTGCACTGGCTGGCGATCTTCGCGCTTCACCAGAATGACGTTATCAAGACGCGACGACAGTTTTTCCATTTTTTGTAGCGGCGTAACCTGCGCCGCCTCGTAAACCGGCGCGCGCA > 1:2107457/1‑150 TCATGGCGTATGCGCCGCGCAGCTTAAAGCTGTGCACTGGCTGGCGATCTTCGCGCTTCACCAGAATGACGTTATCAAGACGCGACGACAGTTTTTCCATTTTTTGTAGCGGCGTAACCTGCGCCGCCTCGTAAACCGGCGCG > 1:1755750/1‑143 TCATGGCGTATGCGCCGCGCAGCTTAAAGCTGTGCACTGGCTGGCGATCTTCGCGCTTCACCAGAATGACGTTATCAAGACGCGACGACAGTTTTTCCATTTTTTGTAGCGGCGTAACCTGCGCCGCCTCGTAAACCGGCGCG < 2:1755750/143‑1 GCGGCGTAACCTGCGCCGCCTCGTAAACCGGCGCGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATA > 2:402480/1‑150 GGCGTAACCTGCGCCGCCTCGTAAACCGGCGCGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACG > 2:1057102/1‑150 CGTAACCTGCGCCGCCTCGTAAACCGGCGCGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCC > 2:80389/1‑150 CGTAACCTGCGCCGCCTCGTAAACCGGCGCGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCC > 2:430593/1‑150 ACCTGCGCCGCCTCGTAAACCGGCGCGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGA > 2:1233270/1‑150 CCTGCGCCGCCTCGTAAACCGGCGCGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGAT > 2:2108617/1‑150 CTGCGCCGCCTCGTAAACCGGCGCGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATG > 2:1712144/1‑150 CTGCGCCGCCTCGTAAACCGGCGCGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATG > 1:1942686/1‑150 GCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAA < 2:1873933/150‑1 CGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAG < 2:2045265/150‑1 CGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAG > 2:1321253/1‑150 AGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGC < 2:1182256/150‑1 GGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCA > 2:1389820/1‑150 CCCGCCATCATGGCGTATGCGCCGCGCAGCTTAAAGCTGTGCACTGGCTGGCGATCTTCGCGCTTCACCAGAATGACGTTATCAAGACGCGACGACAGTTTTTCCATTTTTTGTAGCGGCGTAACCTGCGCCGCCTCGTAAACCGGCGCGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3955545‑3955391 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCGCGAAGATCGCCAGCCAGTGCACAGCTTTAAGCTGCGCGGCGCATACGCCATGATGGCGGGCCTGACGGAAGAACAGAAAGCGCA > NC_000913/3955421‑3955569 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |