| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4004132 = | 124 (0.870) | 11 (0.080) | 8/264 | NT | 8.2% | coding (47/891 nt) | rarD | putative transporter RarD |
| ? | NC_000913 | 4004162 = | 127 (0.930) | coding (17/891 nt) | rarD | putative transporter RarD | |||||
CACAATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4004286‑4004132‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgcGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGAC > NC_000913/4004162‑4004310 CACAATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGTTGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTT > 1:194002/1‑150CACAATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTT > 2:2257071/1‑150CACAATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAAAGCGGCAGGGCGTATTAATCGCTCTT > 1:657400/1‑150 CAATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGC < 1:1054603/150‑1 CAATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGC > 1:166765/1‑150 CAATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGC > 1:1883535/1‑150 AATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGCC < 2:949532/150‑1 AATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGCC < 2:25606/150‑1 AATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGCC < 1:1976517/150‑1 ATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGCCG < 1:1648237/150‑1 TGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGCCGC > 2:856295/1‑150 TGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGCCGC > 2:196660/1‑150 GCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAA > 1:722478/1‑150 AAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGC > 2:312625/1‑150 AACAAACGCGGCAGGGCGTATTACTCGCTCTTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTG > 1:322425/1‑150 CAAACGCGGCAGGGCGTATTACTCGCTCTTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTT > 1:1152476/1‑150 AACGCGGCAGGGCGTATTACTCGCTCTTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCT > 1:686896/1‑150 AACGCGGCAGGGCGTATTACTCGCTCTTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCT > 1:913190/1‑150 AACGCGGCAGGGCGTATTACTCGCTCTTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCT > 1:643013/1‑150 ACGCGGCAGGGCGTATTACTCGCTCTTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTT > 2:902509/1‑150 GCGGCAGGGCGTATTACTCGCTCTTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCA > 1:1962306/1‑150 CGGCAGGGCGTATTACTCGCTCTTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCAT > 2:1948085/1‑150 CGGCAGGGCGTATTACTCGCTCTTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCAT > 2:2204591/1‑150 TGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACG > 2:87135/1‑150 TGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACG > 1:1359724/1‑150 TGCCGCGTTTGTTTTGCATCCAACGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATTTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGATGTTCTTCATTGTGTAATTCAACGCTGGCGACG > 2:1235177/1‑150 CCGCGTTTGTTTTGAATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGCCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGC < 1:515914/150‑1 GCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGA < 1:2423967/150‑1 CGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGAC < 1:53909/150‑1 CACAATGAAGAACAGCTTTATATTGCCAGTGCCACCGCCACCTATATGGTAGGTTGAAGACATAAAAGCAGGTAAACTGCTGTTACCAATTAAAAATGAGTATTCCCGATGGATGCAAAACAAACGCGGCAGGGCGTATTACTCGCTCTTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4004286‑4004132‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgcGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATTGGTAACAGCAGTTTACCTGCTTTTATGTCTTCAACCTACCATATAGGTGGCGGTGGCACTGGCAATATAAAGCTGTTCTTCATTGTGTAATTCAACGCGGGCGACGGCGAC > NC_000913/4004162‑4004310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |