| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4288211 = | 148 (1.030) | 9 (0.070) | 9/264 | NT | 6.0% | coding (448/1437 nt) | nrfA | cytochrome c552 nitrite reductase |
| ? | NC_000913 | 4288265 = | 138 (1.010) | coding (502/1437 nt) | nrfA | cytochrome c552 nitrite reductase | |||||
CGTCCGGCTTTCTCAAAAGGTTTACCAATGGCTTCCATCGCGCGAGCCGCATACGGACGGGAAAGGGTTAACTCCGGTTTGCCTTTGGCGAACTCTGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4288365‑4288211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTA > NC_000913/4288265‑4288413 CGTCCGGCTTTCTCAAAAGGTTTACCAATGGCTTCCATCGCGCGAGCCGCATACGGACGGGAAAGGGTTAACTCCGGTTTGCCTTTGGCGAACTCTGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGA > 1:1548989/1‑150CGTCCGGCTTTCTCAAAAGGTTTACCAATGGCTTCCATCGCGCGAGCCGCATACGGACGGGAAAGGGTTAACTCCGGTTTGCCTTTGGCGAACTCTGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGA < 2:2114218/150‑1 GTCCGGGTTTCTCAAAAGGTTTACCAATGGCTTCCATCGCGCGAGCCGCATACGGACGGGAAAGGGTTAACTCCGGTTTGCCTTTGGCGAACTCTGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGAC < 2:839704/150‑1 GTCCGGCTTTCTCAAAAGGTTTACCAATGGCTTCCATCGCGCGAGCCGCATACGGACGGGAAAGGGTTAACTCCGGTTTGCCTTTGGCGAACTCTGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGAC > 2:2089019/1‑150 CCGGCTTTCTCAAAAGGTTTACCAATGGCTTCCATCGCGCGAGCCGCATACGGACGGGAAAGGGTTAACTCCGGTTTGCCTTTGGCGAACTCTGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCG > 2:2401874/1‑150 CGGCTTTCTCAAAAGGTTTACCAATGGCTTCCATCGCGCGAGCCGCATACGGACGGGAAAGGGTTAACTCCGGTTTGCCTTTGGGGAACTCTGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCGC > 2:1413672/1‑150 CGGCTTTCTCAAAAGGTTTACCAATGGCTTCCATCGCGCGAGCCGCATACGGACGGGAAAGGGTTAACTCCGGTTTGCCTTTGGCGAACTCTGGAGAGGCGGTGTTATGGCAATCGGCAAAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCGC > 1:1878900/1‑150 GGCTTTCTCAAAAGGTTTACCAATGGCTTCCATCGCGCGAGCCGCATACGGACGGGAAAGGGTTAACTCCGGTTTGCCTTTGGCGAACTCTGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCGCC > 2:1793334/1‑150 CGAACTCTGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACC > 1:237048/1‑150 CTGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGA > 2:2218596/1‑150 TGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCATTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAG > 2:1430025/1‑150 AGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGA < 1:2362357/146‑1 AGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGA > 2:2362357/1‑146 TATGGCAATCGGCACAACCTAAGTTGTTGACGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACG > 1:1403414/1‑150 TGGCAATCGGCACAACCTAAGTTGTTGACGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTT > 2:1937509/1‑150 CGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCA > 1:1163037/1‑150 CCTAAGTTGTTGACGATTTCC‑‑‑GGACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGG < 1:2218596/150‑1 ACCGCCTGTCCAGAGTTCGCCAAAGGCAAAACGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAG > 2:635277/1‑150 CCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGT < 2:237048/150‑1 CGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTA < 1:2122105/150‑1 CGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTA < 2:2291864/150‑1 GCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGCCCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTAT > 1:1803133/1‑150 CCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTGAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATT < 1:2377052/150‑1 CTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTA < 2:1108500/150‑1 CTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTA > 2:1638701/1‑150 CTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTA > 1:869913/1‑150 CTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTA < 1:830351/150‑1 CGTCCGGCTTTCTCAAAAGGTTTACCAATGGCTTCCATCGCGCGAGCCGCATACGGACGGGAAAGGGTTAACTCCGGTTTGCCTTTGGCGAACTCTGGAGAGGCGGTGTTATGGCAATCGGCACAACCTAAGTTGTTGACGATTTCC‑‑‑GGACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4288365‑4288211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTA > NC_000913/4288265‑4288413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |