New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2947467	29 (0.200)	7 (0.050) +TTG	7/270	NT	8.0%	intergenic (+4/‑30)	metZ/metW	tRNA‑Met/tRNA‑Met
	?	NC_000913	= 2947708	136 (0.950)					intergenic (+25/+49)	metV/amiC	tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase C

CAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGG  >  NC_000913/2947318‑2947603                                                                                                                                                      |                                                                                                                                          cAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTa                                                                                                                                           <  2:1911529/150‑1 (MQ=255)    aTCCGTTATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCTCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttg                                                                                                                                        <  2:482637‑M1/150‑4 (MQ=255)    aTCCGTGATCGGGGTAAAACTACGGTGCCATGAAAACTCGAGCGTAGTATTGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCaaat                                                                                                                                        <  1:1994235/150‑2 (MQ=18)     tgcGTGATGTGGTTAAAAAAAAGGTTGCATGAAAACTCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCaaatt                                                                                                                                       <  2:2029152/148‑3 (MQ=18)      ccGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAAtt                                                                                                                                      <  2:1850995/150‑1 (MQ=255)      ccGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAAtt                                                                                                                                      <  2:1707972/150‑1 (MQ=255)       cGTGATCGGGGTAAACAAAAGCTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAAttt                                                                                                                                     <  2:2313404/150‑1 (MQ=255)       cGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAAttt                                                                                                                                     <  2:1206173/150‑1 (MQ=255)         tgctCGTGGTATAAAAAAGGTGGCAGGAAAAATATAGCGTAGTATAGTGCGAATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTtgat                                                                                                                                  <  1:1997935/147‑1 (MQ=14)         tGATGGGGTTAAAAAAAAGGTTGAATGAAAACTCTAGCGGAGTATAGTTCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTtgat                                                                                                                                  <  2:1673197/150‑1 (MQ=17)         tGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtga                                                                                                                                   <  1:1961185/150‑1 (MQ=255)         tGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtga                                                                                                                                   <  1:515927/150‑1 (MQ=255)         gtatggggtTAAAAAAAAGGTTGCATGAAAACTCTAGGGTAGTATAGTTCGCTTCCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTtgat                                                                                                                                  <  2:2409020/145‑1 (MQ=14)          gATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACGCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtgat                                                                                                                                  <  2:1791294/150‑1 (MQ=255)           aTCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTtgatg                                                                                                                                 <  1:1641429/150‑1 (MQ=255)              ggggTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacaccctaa                                                                                                                              >  1:607995‑M1/1‑137 (MQ=255)               gggTTAAAAATAGGTTGCATGAAAACGCGAGCGGAGTATAGTGGGGATGCAGGGACGCGGGGTGGAGCAGCCTGGTAGCTGGTCGGGCTGATAACCCGAAGGTCGGGGGGTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGt                                                                                                                             <  2:1077991/150‑1 (MQ=18)               gggTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCTTAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGt                                                                                                                             <  2:2429240/150‑1 (MQ=255)                 gTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttaaaaaccctaacag                                                                                                                           >  2:878791‑M1/1‑134 (MQ=255)                  tctaaacaaGGTTGCATGAAATCTCTATCGGAGTATATTCCGAATACACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑aaaa                                                                                                                        <  1:2004796/147‑2 (MQ=11)                   aaaaaaaaGGTTGCATGAAAACTCTAGGGTAGTATAGTGCGCTTCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑aaaag                                                                                                                       <  2:1826420/150‑3 (MQ=17)                   aaaaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAg                                                                                                                        <  1:2302580/150‑1 (MQ=255)                    acataaaGGTTGCATGAAAACCCGAGCGTAGTATTGTGCGCATCCTCGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGT‑AAAGCa                                                                                                                      <  1:563683/146‑1 (MQ=17)                    aaaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGc                                                                                                                       <  2:489016/150‑1 (MQ=255)                    aaaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGGGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCGCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGc                                                                                                                       <  2:1941300/150‑1 (MQ=255)                     aaaaaaGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAAATTT‑AAGAAGT‑aaaaaca                                                                                                                     >  2:2004796/1‑146 (MQ=21)                       aaagGGGTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacacccgttagggtgttc                                                                                                                     <  2:1354401‑M1/150‑23 (MQ=255)                           ggTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACgg                                                                                                                <  2:2168250/150‑1 (MQ=255)                           ggTTGCATGAAAAATCTAGCGTAGTATATTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAA‑TCAAATTTGATGAAGTAAAAGCAGTACgg                                                                                                                <  1:1785229/150‑1 (MQ=14)                            gTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGt                                                                                                               <  2:1864720/150‑1 (MQ=255)                                cATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGAcg                                                                                                           <  2:224623/150‑1 (MQ=255)                                     aaaCGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCgggg                                                                                                      <  1:199263/150‑1 (MQ=255)                                      aaCGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGGCGGGCTCATAACCCGAAGGGCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGGAGTACGGTGACGCGGGGt                                                                                                     <  2:266179/150‑1 (MQ=255)                                       aCGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGTg                                                                                                    <  2:2403770/150‑1 (MQ=255)                                             gCGGAGTATAGTGCTCATCCACTGACTATGGTTGGAGCAGCCTGGTAGCTCGTCGGGATCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCGCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGTGGagcag                                                                                              <  2:1169849/150‑1 (MQ=17)                                                                cacgcacgCGGGGTGGAGCAGCGTGGTTGCTCGTCGGTCTCTTAACCCGAAGGTCGTCGGTGCATATACGGCCGCCGCAATGAATTATAATTTGATGAAGT‑AATGGAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCt                                                                           <  2:1908949/150‑1 (MQ=14)                                                                                          tctcTCGGCGGGCTCATAACCCTAAGGGCGGCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AACGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCaaa                                                 <  1:1234561/147‑1 (MQ=14)                                                                                                gtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaac                                                                                                                                     <  1:394284‑M1/61‑7 (MQ=255)                                                                                                gtcgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaac                                                                                                                                     >  2:394284‑M1/1‑55 (MQ=255)                                                                                                   gggCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacacccgttagggtgttcaat                                                                                                                  <  1:313748‑M1/77‑26 (MQ=255)                                                                                                   gggCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttgaacacccgttagggtgttcaat                                                                                                                  >  2:313748‑M1/1‑52 (MQ=255)                                                                                                    ggCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttg                                                                                                                                        >  1:2458846‑M1/1‑51 (MQ=255)                                                                                                    ggCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAttg                                                                                                                                        <  2:2458846‑M1/54‑4 (MQ=255)                                                                                                                                aaTCCGGCCCCCGCAACCAATTAttgaacacccgttagggtgttca                                                                                                                    <  1:104446‑M1/46‑24 (MQ=255)                                                                                                                                aaTCCGGCCCCCGCAACCAATTAttgaacacccgttagggtgatca                                                                                                                    >  2:104446‑M1/1‑23 (MQ=255)                                                                                                                                         cccGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATGAATTTAGAGGCAGTAAGAGCAGTACgt  >  1:926742/1‑149 (MQ=17)                                                                                                                                                      |                                                                                                                                          CAAATCCGTGATCGGGGTAAAAAAAAGGTTGCATGAAAACGCGAGCGGAGTATAGTGCGCATCCACGGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTAAAATTTGATGAAGT‑AAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGG  >  NC_000913/2947318‑2947603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.