| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 9 (0.070) | 6/264 | NT | 100% | coding (1029/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | rhs element protein RhsB | |||||
TTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAA > NC_000913/3620106‑3620403 | tttACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATTGTGGCGCACCGTCACACGGGCCGGCC > 2:2159191‑M2/1‑150 (MQ=255)tttACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC < 2:673336‑M2/150‑1 (MQ=255)tttACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC > 1:1224809‑M2/1‑150 (MQ=255)tttACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC > 2:552432‑M2/1‑150 (MQ=255) gttcgccgcgtggcgtccagccatagcgcaccagcggcGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGa > 2:2190709‑M2/39‑150 (MQ=255) gccagttcgccgcgtggcgtccagccatagcgcaccaGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGAGGATAAATACCGGGGCCGGATGGTGGCGCGCCGGCACACGGGCCGGCCGGaa > 1:1678625‑M2/38‑150 (MQ=255) cagttcgccgcgtggcgtccagccatagcgcaccaGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAAt > 1:1005426‑M2/36‑150 (MQ=255) caaaGCGGAGAACTAGCGGTAGTGTATTACAGTAGTTGCAAACAGGTGCGCACCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTg > 2:1184384‑M2/5‑150 (MQ=255) GCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAg < 1:220665‑M2/150‑1 (MQ=255) GCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAg < 2:1973228‑M2/150‑1 (MQ=255) CGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGAcgggcggg > 1:1467397‑M2/1‑143 (MQ=255) CGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGAcgggcggg < 2:1467397‑M2/143‑1 (MQ=255) CGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGa < 2:2402058‑M2/150‑1 (MQ=255) GCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAAc < 1:336518‑M2/150‑1 (MQ=255) CGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACa < 2:1266687‑M2/150‑1 (MQ=255) GAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAg < 2:303800‑M2/150‑1 (MQ=255) GAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAg < 2:558711‑M2/150‑1 (MQ=255) GAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAg < 2:650092‑M2/150‑1 (MQ=255) GAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAg < 1:2181147‑M2/150‑1 (MQ=255) tgatAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcgg < 2:2163768‑M2/150‑103 (MQ=255) aTACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggc < 2:1306524‑M2/150‑109 (MQ=255) aCCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcag < 1:1022905‑M2/150‑111 (MQ=255) ccGGGGCCGGATGGTGGCGCACCGTCACCCGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcagg < 2:2305063‑M2/150‑112 (MQ=255) ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggta < 2:1667481‑M2/150‑114 (MQ=255) ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggta < 2:1769918‑M2/150‑114 (MQ=255) ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggta < 1:1265375‑M2/150‑114 (MQ=255) ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggta < 2:1897051‑M2/150‑114 (MQ=255) gCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaat < 1:612554‑M2/150‑117 (MQ=255) ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcag < 1:1043694‑M2/150‑145 (MQ=255) ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcag < 1:119882‑M2/150‑145 (MQ=255) ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcag > 2:1705544‑M2/1‑6 (MQ=255) cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagc < 2:177716‑M2/150‑146 (MQ=255) cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagc > 2:1041308‑M2/1‑5 (MQ=255) cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagc > 2:1858830‑M2/1‑5 (MQ=255) ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcc < 2:466948‑M2/150‑147 (MQ=255) ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcc < 2:321270‑M2/150‑147 (MQ=255) ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcc > 2:310762‑M2/1‑4 (MQ=255) ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcc > 1:1897051‑M2/1‑4 (MQ=255) ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcc > 2:933603‑M2/1‑4 (MQ=255) ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcc < 1:1956021‑M2/150‑147 (MQ=255) ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcc > 1:36386‑M2/1‑4 (MQ=255) ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcc > 2:1487964‑M2/1‑4 (MQ=255) gccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcca > 2:2279454‑M2/1‑3 (MQ=255) gccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcca > 1:1161462‑M2/1‑3 (MQ=255) gccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagcca > 2:1385292‑M2/1‑3 (MQ=255) ccccggtatttatcgtcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccac < 1:1260048‑M2/150‑149 (MQ=255) ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccac > 1:1262103‑M2/1‑2 (MQ=255) ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccac > 1:2321889‑M2/1‑2 (MQ=255) ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccggg > 1:623871‑M2/1‑2 (MQ=255) cccccgtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccagcggcgcggcaggtaaattctccgggtattccggg < 2:623871‑M2/135‑134 (MQ=255) | TTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAA > NC_000913/3620106‑3620403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |