| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,011,388 | C→A | 5.7% | pseudogene (964/1129 nt) | yedN ← | putative type III secreted effector, N‑terminal fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,011,388 | 0 | C | A | 5.7% | 445.3 / 8.9 | 136 | pseudogene (964/1129 nt) | yedN | putative type III secreted effector, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base C (58/70); new base A (3/5); total (61/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.30e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 | |||||||||||
Only 100 of 138 total aligned reads displayed.
GTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTTAGTAGTCTCAGGC > NC_000913/2011240‑2011537 | gTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTGTCTTCAAAAGAATTACa > 2:1079708/1‑150 (MQ=255) ccTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTc < 1:939254/150‑1 (MQ=255) ccTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTc < 2:1342688/150‑1 (MQ=255) tCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCtt < 2:1287304/150‑1 (MQ=255) cACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAAGATTATATTTTCGCTGCGATCTTTCATAGCAAATCGCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCttt < 2:1775196/150‑1 (MQ=255) aCCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTa < 2:1284156/150‑1 (MQ=255) ccATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTaa > 1:135696/1‑150 (MQ=255) aTCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTaaaa < 1:401424/150‑1 (MQ=255) tCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTaaaaa > 2:778683/1‑150 (MQ=255) tCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTaaaaa < 1:2143771/150‑1 (MQ=255) tCTATTACATACTTTTTAACCATATCGGAATATTTATAATAATCAGCTGTATTAGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATGTAATTCttttgaag < 2:2303277/150‑6 (MQ=255) tATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATGTAATTCttttgaagag < 2:2348064/150‑8 (MQ=255) ttACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTaa < 2:429496/150‑1 (MQ=255) tACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAAt > 2:1452151/1‑150 (MQ=255) aCATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAAtt > 2:1853343/1‑150 (MQ=255) cATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTT‑AAAAGTAATTCt > 1:1004123/1‑150 (MQ=255) tACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCtt < 1:1374640/150‑1 (MQ=255) tACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCtt > 2:179338/1‑150 (MQ=255) ttttAACCATATCGTAATATTTATCATAATCAGCGTGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTAtt < 1:1464468/150‑1 (MQ=255) ccATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCtata > 2:1033736/1‑150 (MQ=255) ccATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCtata < 1:1544689/150‑1 (MQ=255) ccATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCtata < 1:879116/150‑1 (MQ=255) cGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGc > 2:2460489/1‑150 (MQ=255) gAATATTTATCATAATAAGCGTGATTCTTAACAATATATTTTCTCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCag < 2:174471/150‑1 (MQ=255) atTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGAc < 2:338981/150‑1 (MQ=255) aTCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAAcc > 2:612703/1‑150 (MQ=255) tCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATTATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCt < 2:37192/150‑1 (MQ=255) cATAATCAGAGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTc > 1:155242/1‑150 (MQ=255) aTAATCAGCGGGATTCGTAGCAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCa > 2:1565928/1‑150 (MQ=255) tAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCaa < 2:1582994/150‑1 (MQ=255) tAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCaa < 1:494225/150‑1 (MQ=255) tAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCaa > 1:547255/1‑150 (MQ=255) aaTCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAat > 2:198535/1‑150 (MQ=255) aaTCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAat < 2:898958/150‑1 (MQ=255) aTCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACACCCTCAata > 2:2443084/1‑150 (MQ=255) aGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATca < 2:2415771/150‑1 (MQ=255) cGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATcaca > 2:760047/1‑150 (MQ=255) tggATTCTTAACAATATATTTTCGGTGGGATCTTTGATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTGTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGAGAACCTCAATATCacac < 2:47536/149‑1 (MQ=255) ggtaTTCGTAACAATATATTTTCGCTTCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCacac < 1:2083790/147‑1 (MQ=255) ggATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCacacg > 2:2487528/1‑149 (MQ=255) gATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTc < 1:1498786/150‑1 (MQ=255) tCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCAt < 1:1637085/150‑1 (MQ=255) cGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCCCACTCCATa > 2:2122437/1‑150 (MQ=255) cGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATa < 2:135696/150‑1 (MQ=255) cAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGc > 1:1250975/1‑150 (MQ=255) aaTATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCt > 2:767722/1‑150 (MQ=255) tatatTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCttt < 2:1848665/150‑1 (MQ=255) ttttCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTcc < 1:1932990/150‑1 (MQ=255) tCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAga < 1:1015812/150‑1 (MQ=255) cGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAgat > 2:1608997/1‑150 (MQ=255) gCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAgatg > 2:2078449/1‑150 (MQ=255) cGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGAttt > 1:1559161/1‑150 (MQ=255) cGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGAttt > 1:1567404/1‑150 (MQ=255) tCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTggg < 1:778683/150‑1 (MQ=255) cTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGa > 1:821697/1‑150 (MQ=255) tttCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGaa > 2:491951/1‑150 (MQ=255) aTAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTTTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTAt > 2:1626868/1‑150 (MQ=255) tAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTAtt > 1:338039/1‑150 (MQ=255) aGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTg < 1:1033736/150‑1 (MQ=255) gCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGa > 2:64526/1‑150 (MQ=255) aaaTCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAAt < 2:2072696/150‑1 (MQ=255) aaTCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAAtt < 1:1247736/150‑1 (MQ=255) aaTCCATTTCAAATTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAAtt < 1:1079172/150‑1 (MQ=255) tCCCTGTCAAAGTACATGATATAAAAATGTCTAATCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGATATATATCGCAGAGACAAAATCAATATCACACTCGATACGTGCTTTCTCCAGATGAATTGGGAAGTATTGAATTTc > 2:2367185/1‑150 (MQ=255) ccTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCATATGATTTGGGAAGTATTGAATTTCtt < 2:609355/150‑1 (MQ=255) ccTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCtt < 1:698831/150‑1 (MQ=255) ccTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCtt > 2:306092/1‑150 (MQ=255) ccTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCtt < 1:198535/150‑1 (MQ=255) cTGTCATAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCttt < 1:1067454/150‑1 (MQ=255) cTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCttt > 1:58188/1‑150 (MQ=255) cTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCttt < 1:418101/150‑1 (MQ=255) tCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTAt < 1:31174/150‑1 (MQ=255) cAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATc < 2:2019417/150‑1 (MQ=255) cAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATc > 1:2212284/1‑150 (MQ=255) aaaaGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATc < 1:1153148/149‑1 (MQ=255) aaaGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCt > 1:2085673/1‑150 (MQ=255) aaaGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCt < 1:1601304/150‑1 (MQ=255) aTGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATc > 2:512960/1‑150 (MQ=255) tGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCg > 2:2121375/1‑150 (MQ=255) tataAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCca > 1:46292/1‑150 (MQ=255) tataAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCca > 1:971786/1‑150 (MQ=255) taAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCcaca < 1:1708959/150‑1 (MQ=255) taAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCcaca > 2:887759/1‑150 (MQ=255) tGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTaaa < 2:381465/150‑1 (MQ=255) gtatctTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCATAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAAc < 1:1400348/147‑1 (MQ=255) tctTCAAAAGAATTACATTCTTTAAATAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTTTTATGGCCACAATTAAACAGc < 2:2013672/150‑1 (MQ=255) tctTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGc < 2:2005205/150‑1 (MQ=255) ttCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCtt > 2:639153/1‑150 (MQ=255) tttaaaGAATGTAATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTta > 1:783443/4‑150 (MQ=255) cAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTtag > 2:1263432/1‑150 (MQ=255) cAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTtag < 2:1138126/150‑1 (MQ=255) cAAAAGAATTAAATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGATTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTtag < 2:434422/150‑1 (MQ=255) aaaaGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTtagt > 1:1709602/1‑150 (MQ=255) aaaGAATTACATTCTTT‑AAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTtagtag < 2:1004123/150‑1 (MQ=255) aataaTTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCTGAGAGTACCTCAATATCACACTCGATACGTGCTTTCTCCAGATGATTTGGGAATTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTtagtag < 1:1669588/147‑1 (MQ=255) aaGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTtagtag < 1:2485448/150‑1 (MQ=255) aaTTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTTAGTAGtct < 2:547255/150‑1 (MQ=255) tACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATAAGTGCTTTCTACAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTTAGTAGTCTCAg > 1:676877/1‑150 (MQ=255) aCATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTTAGTAGTCTCAgg > 1:2211118/1‑150 (MQ=255) cATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTTAGTAGTCTCAGGc > 2:1616008/1‑150 (MQ=255) | GTTCCTCACCATCTATTACATACTTTTTAACCATATCGGAATATTTATCATAATCAGCGGGATTCGTAACAATATATTTTCGCTGCGATCTTTCATAGCAAATCCCTGTCAAAGTCCATGATATAAAAATGTCTCTTCAAAAGAATTACATTCTTTAAAAAGTAATTCTTTATTGCTATATATCGCAGAGACAACCTCAATATCACACTCCATACGTGCTTTCTCCAGATGATTTGGGAAGTATTGAATTTCTTTTATCTTATTATCGCCACAATTAAACAGCTTAGTAGTCTCAGGC > NC_000913/2011240‑2011537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |