| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,884,577 | T→C | 5.2% | R881R (AGA→AGG) ‡ | cas3 ← | CRISPR‑associated endonuclease/helicase Cas3 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,884,577 | 0 | T | C | 5.2% | 546.4 / 12.7 | 173 | R881R (AGA→AGG) ‡ | cas3 | CRISPR‑associated endonuclease/helicase Cas3 |
| Reads supporting (aligned to +/- strand): ref base T (72/92); new base C (3/6); total (75/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.73e-01 | |||||||||||
Only 100 of 175 total aligned reads displayed.
CTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACAT > NC_000913/2884429‑2884725 | gtgAATATAAAATATAATACAGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACAGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTg > 2:276767/1‑150 (MQ=255) tgAATATTAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTgg < 1:1825498/150‑1 (MQ=255) tgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCGTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTgg < 1:2311905/150‑1 (MQ=255) tgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTgg < 1:233644/150‑1 (MQ=255) tgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTgg < 2:532103/150‑1 (MQ=255) tgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTgg < 1:242200/150‑1 (MQ=255) tgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTgg > 2:2461539/1‑150 (MQ=255) aaTATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTc > 1:2303457/1‑150 (MQ=255) aaTATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTc < 1:1209962/150‑1 (MQ=255) ataAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATc > 1:430000/1‑150 (MQ=255) taAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATcc < 1:1813419/150‑1 (MQ=255) aaaaTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATccc > 2:1844247/1‑150 (MQ=255) aaaTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCt < 1:1758364/150‑1 (MQ=255) aaaTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACCAGAGTCATCCCt < 1:491231/150‑1 (MQ=255) aaaTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACCAGAGTCATCCCt < 1:108384/150‑1 (MQ=255) aaTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCtt < 2:541347/150‑1 (MQ=255) aaTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACCAGAGTCATCCCtg < 1:537626/150‑2 (MQ=255) aTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACCAGAGTCATCCCtgc < 1:2245692/150‑3 (MQ=255) tctcATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTTCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑a > 1:301982/1‑150 (MQ=255) aTACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATccc < 2:345783/150‑1 (MQ=255) tACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATcccc < 1:276421/150‑1 (MQ=255) ccGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTg < 2:905757/150‑1 (MQ=255) cGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGt < 2:1142601/150‑1 (MQ=255) ggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGtat < 2:434303/150‑1 (MQ=255) ggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGtat < 1:652922/150‑1 (MQ=255) aaTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAgg < 2:423307/150‑1 (MQ=255) tAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGtaa > 2:1410807/1‑150 (MQ=255) aagaagATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGtaataa < 2:941139/150‑1 (MQ=255) aagaagATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGt < 1:2067894/145‑1 (MQ=255) aagaagATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGt > 2:2067894/1‑145 (MQ=255) agaagaTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAAc < 2:834241/150‑1 (MQ=255) gaTGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATa > 2:1079728/1‑150 (MQ=255) tGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACt > 2:1959906/1‑150 (MQ=255) gTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTg < 1:1064386/150‑1 (MQ=255) gTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTg < 2:49312/150‑1 (MQ=255) tACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCACGAAGTTATTAGGGATTTGCAGGGATGACTCTGGTAATCCCTTC‑‑ATCCCCTGTATAGGTAATAAAAATACTGt > 1:2223379/1‑150 (MQ=255) aCATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGtt > 1:1151853/1‑150 (MQ=255) ttGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTAcc > 1:1315324/1‑150 (MQ=255) gtgCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCt > 1:1868363/1‑150 (MQ=255) tgCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTg > 1:2253500/1‑150 (MQ=255) gCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGc > 2:1572244/1‑150 (MQ=255) cACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGcc > 2:124776/1‑150 (MQ=255) tttatCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCa > 1:1935753/5‑150 (MQ=255) tACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGTATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACccatc < 1:1654987/150‑1 (MQ=255) cTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACccatcca > 2:1519737/1‑150 (MQ=255) cTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACccatcca > 2:419710/1‑150 (MQ=255) aaGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCatccatcc < 1:1140277/150‑1 (MQ=255) aGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCAtccatcca < 1:2422212/150‑1 (MQ=255) aGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCAtccatcca < 2:692556/150‑1 (MQ=255) gTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAg < 2:2253500/150‑1 (MQ=255) gTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAg < 2:1101874/150‑1 (MQ=255) tAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGa < 1:1654961/150‑1 (MQ=255) aGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGAt < 1:2460893/150‑1 (MQ=255) ggATAAACCGTTATTGTTCTTATTATCGTCATTGATAACAATCTTTCACGAAGTTATTTGGGATTTGCATGGATGAATCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAAAAATACTGTTACCCTGCCAGACCCATCCATCCAGATTc < 1:1863434/150‑1 (MQ=255) aaCCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGttt > 1:885148/1‑150 (MQ=255) ccGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTcc < 2:761536/150‑1 (MQ=255) tATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTc > 2:2297894/1‑150 (MQ=255) tATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTc < 2:2302321/150‑1 (MQ=255) tATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTc < 1:68806/150‑1 (MQ=255) aTTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTcc < 2:2126042/150‑1 (MQ=255) ttGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCa > 1:136507/1‑150 (MQ=255) gTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGcc > 1:815380/1‑150 (MQ=255) tattatCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAg < 1:1016950/150‑1 (MQ=255) attatCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGt < 1:1959906/150‑1 (MQ=255) ttatCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTa < 2:1169035/150‑1 (MQ=255) ttatCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTa < 1:2287505/150‑1 (MQ=255) tatCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTaa < 2:153230/150‑1 (MQ=255) tatCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTaa > 2:63349/1‑150 (MQ=255) tatCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTaa > 2:786359/1‑150 (MQ=255) cGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAAccc > 2:2026977/1‑150 (MQ=255) aTTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCt < 1:447555/150‑1 (MQ=255) gATAACAATCATTCCTGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAAACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCa < 2:2185591/150‑1 (MQ=255) gATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCa < 1:1712019/150‑1 (MQ=255) aaCAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATct < 1:1410184/150‑1 (MQ=255) cAATCATTCCCGAGGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATctac > 2:704544/1‑150 (MQ=255) aTCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATctacta < 1:1519737/150‑1 (MQ=255) aTCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTCTTTCCCTTCCAGCCAAAGTAACCCATCTTCATctacta < 1:716678/150‑1 (MQ=255) tCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCtactac > 1:1053684/1‑150 (MQ=255) tCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCa < 1:2119142/150‑1 (MQ=255) cccGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCGCTTCCAGCCAAAGTAACCGATGTGCCTCGCCTACTTCAg > 1:555811/1‑150 (MQ=255) cccGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAg > 2:1239297/1‑150 (MQ=255) aGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGaaaaa < 1:1230681/150‑1 (MQ=255) gTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAAc < 1:1127042/150‑1 (MQ=255) aTTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTAc < 1:1239297/150‑1 (MQ=255) tGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGtt < 1:1410807/150‑1 (MQ=255) aTTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACACTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCa < 2:1849141/150‑1 (MQ=255) tgaaGGGATGACCAGAGTCATCCCTGCAAATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAg > 2:1658625/4‑150 (MQ=255) gCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATctacta < 1:255566/124‑1 (MQ=255) gCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTg > 2:1692603/1‑150 (MQ=255) cAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGCCCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGa > 2:251653/1‑150 (MQ=255) aaGGGATGACCAGAGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGa > 1:907619/2‑150 (MQ=255) aaGGGATGACCAGAGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACAATGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGGGa > 2:732651/2‑150 (MQ=255) gggATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCACTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGATTCAAGTTGAAg > 2:1041078/1‑150 (MQ=255) gATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAggg < 1:1572244/150‑1 (MQ=255) aTGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGt < 2:256721/150‑1 (MQ=255) tGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTa < 1:63349/150‑1 (MQ=255) gACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTAc < 2:301982/150‑1 (MQ=255) gACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTAc < 1:600699/150‑1 (MQ=255) aCTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAGAACTACGTTTCCAGGTGAAGGGTACa > 2:613003/1‑150 (MQ=255) ctctGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCAACTACTACTTCAGAAAAACAACGTTTCCAGGTGAAGGGTACAt > 1:2398730/1‑150 (MQ=255) | CTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTC‑‑ATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCATCCATCCAGATTCTGTTTCCCTTCCAGCCAAAGTAACCCATCTTCATCTACTACTTCAGAAAAACTACGTTTCCAGGTGAAGGGTACAT > NC_000913/2884429‑2884725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |