New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 566777 =NA (NA)5273 (24.430) 194/184 0.0 96.8% noncoding (1/1258 nt) IS3 repeat region
?NC_000913 = 572471 175 (0.800)coding (6/456 nt) ybcN DLP12 prophage; DNA base‑flipping protein

Only 100 of 5626 total aligned reads displayed.

GCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTG  >  NC_000913/572372‑572570
                                                                                                   |                                                                                                   
 cacaTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACt                                                                                                    <  1:2923083‑M2/100‑2 (MQ=255)
 cacaTACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACt                                                                                                    >  1:171106‑M2/1‑99 (MQ=255)
     tACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatn                                                                                                >  1:3376249‑M2/1‑95 (MQ=255)
     tACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatc                                                                                                >  1:1407252‑M2/1‑95 (MQ=255)
     tACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGCGGAAGCGTGAACtgatc                                                                                                >  1:3730947‑M2/1‑95 (MQ=255)
      aCAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatct                                                                                               >  1:4257537‑M2/1‑94 (MQ=255)
        aaTCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatctta                                                                                             >  1:3559861‑M2/1‑92 (MQ=255)
         aTCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttac                                                                                            <  1:3956568‑M2/100‑10 (MQ=255)
         aTCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttac                                                                                            <  1:5021485‑M2/100‑10 (MQ=255)
           ccAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccc                                                                                          >  1:2133591‑M2/1‑89 (MQ=255)
           ccAAACTCTCTTCTCCCTTCACAGATGCAGAAACGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccc                                                                                          >  1:5298432‑M2/1‑89 (MQ=255)
            cAACCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccca                                                                                         >  1:4061219‑M2/1‑88 (MQ=255)
            cAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACt                                                                                                    <  2:3801499‑M2/89‑2 (MQ=255)
            cAAACTCTCTTCTCCCTTCACAGATGCAGAAATACACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACt                                                                                                    <  2:4247231‑M2/89‑2 (MQ=255)
             aaaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtg                                                                                                   >  2:52779‑M2/1‑87 (MQ=255)
              aaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagc                                                                                       >  1:2730279‑M2/1‑86 (MQ=255)
                ctctctTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGACGGGAAGCGTGAACtgatc                                                                                                >  2:1687685‑M2/1‑84 (MQ=255)
                      tctcCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtgg                                                                               >  1:794427‑M2/1‑78 (MQ=255)
                      actccCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttaccc                                                                                          >  2:3349138‑M2/2‑78 (MQ=255)
                       ctcCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGAc                                                                                         <  2:4017239/89‑1 (MQ=255)
                        tcCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggac                                                                             >  1:5191455‑M2/1‑76 (MQ=255)
                        tcCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggac                                                                             >  1:2832168‑M2/1‑76 (MQ=255)
                         cccTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggaca                                                                            <  1:5102434‑M2/100‑26 (MQ=255)
                          ccTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagca                                                                                      <  2:3912337‑M2/89‑16 (MQ=255)
                           cTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaa                                                                                     >  2:907666‑M2/1‑73 (MQ=255)
                            ttCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaat                                                                                    <  2:3010628‑M2/89‑18 (MQ=255)
                             tCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcg                                                                        >  1:879484‑M2/1‑71 (MQ=255)
                             tCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATc                                                                                   <  2:4885377/89‑1 (MQ=255)
                              cacaGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcgg                                                                       >  1:3455964‑M2/1‑70 (MQ=255)
                              cacaGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatag                                                                                  <  2:1813544‑M2/89‑20 (MQ=255)
                               acaGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggc                                                                      >  1:2047615‑M2/1‑69 (MQ=255)
                                  gATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaa                                                                   <  1:3642199‑M2/100‑35 (MQ=255)
                                   aTGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggac                                                                             >  2:582260‑M2/1‑65 (MQ=255)
                                    tGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggaca                                                                            <  2:4748365‑M2/89‑26 (MQ=255)
                                     gCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtg                                                                >  1:2301203‑M2/1‑63 (MQ=255)
                                     gCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtg                                                                <  1:1811835‑M2/100‑38 (MQ=255)
                                     gCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtg                                                                >  1:4839915‑M2/1‑63 (MQ=255)
                                     gCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacac                                                                           <  2:2727248‑M2/89‑27 (MQ=255)
                                      cAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGATGCGTGAACtgatcttacccagcaatagtggacacgcggctgagtga                                                               <  1:5516931‑M2/100‑39 (MQ=255)
                                      cAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtga                                                               <  1:70373‑M2/100‑39 (MQ=255)
                                      cAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtga                                                               <  1:384608‑M2/100‑39 (MQ=255)
                                       aGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgag                                                              >  1:4544711‑M2/1‑61 (MQ=255)
                                        gAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcg                                                                        <  2:2803319‑M2/89‑30 (MQ=255)
                                              cACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactc                                                       >  1:2404824‑M2/1‑54 (MQ=255)
                                                ccTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctc                                                     <  1:2513032‑M2/100‑49 (MQ=255)
                                                ccTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtg                                                                >  2:3529737‑M2/1‑52 (MQ=255)
                                                ccTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtg                                                                >  2:2124117‑M2/1‑52 (MQ=255)
                                                 cTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagcggacacgcggctaagtgagtaaactctca                                                    >  1:5414053‑M2/1‑51 (MQ=255)
                                                  tGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag                                                   >  1:1887480‑M2/1‑50 (MQ=255)
                                                  tGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag                                                   <  1:590772‑M2/100‑51 (MQ=255)
                                                  tGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag                                                   <  1:4160445‑M2/100‑51 (MQ=255)
                                                  tGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag                                                   <  1:2618024‑M2/100‑51 (MQ=255)
                                                   gCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt                                                  <  1:1326368‑M2/100‑52 (MQ=255)
                                                   gCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagt                                                             >  2:1264441‑M2/1‑49 (MQ=255)
                                                   gCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagt                                                             <  2:1580096‑M2/89‑41 (MQ=255)
                                                     aaTTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca                                                <  1:1972437‑M2/100‑54 (MQ=255)
                                                     aaTTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCAcc                                                           <  2:1921156/89‑1 (MQ=255)
                                                      aTTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa                                                          >  2:343262‑M2/1‑46 (MQ=255)
                                                        tCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag                                             >  1:2222153‑M2/1‑44 (MQ=255)
                                                         cTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagagg                                            >  1:1123446‑M2/1‑43 (MQ=255)
                                                          tttGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt                                           >  1:1002033‑M2/1‑42 (MQ=255)
                                                          tttGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt                                           >  1:1219216‑M2/1‑42 (MQ=255)
                                                                tCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca                                     >  1:4629624‑M2/1‑36 (MQ=255)
                                                                 cTAGCGTTTGACCTCTGTGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag                                               <  2:4358802‑M2/89‑55 (MQ=255)
                                                                  tAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca                                   >  1:4449740‑M2/1‑34 (MQ=255)
                                                                  tAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga                                              <  2:1477541‑M2/89‑56 (MQ=255)
                                                                   aGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag                                             <  2:2529743‑M2/89‑57 (MQ=255)
                                                                   aGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag                                             <  2:5079582‑M2/89‑57 (MQ=255)
                                                                    gCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagagg                                            >  2:4973085‑M2/1‑32 (MQ=255)
                                                                      gTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtg                                          >  2:2422309‑M2/1‑30 (MQ=255)
                                                                      gTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtg                                          >  2:5156993‑M2/1‑30 (MQ=255)
                                                                            ccTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaac                         <  1:3286599‑M2/100‑77 (MQ=255)
                                                                            ccTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaac                         <  1:1513661‑M2/100‑77 (MQ=255)
                                                                            ccTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcac                                    <  2:3259929‑M2/89‑66 (MQ=255)
                                                                            ccTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcac                                    >  2:118533‑M2/1‑24 (MQ=255)
                                                                              tctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat                                  <  2:5497446‑M2/89‑68 (MQ=255)
                                                                              tctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat                                  <  2:2310669‑M2/89‑68 (MQ=255)
                                                                               ctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatg                                 >  2:4658024‑M2/1‑21 (MQ=255)
                                                                                tGCGGAGGGGAAGCGTGAACtgatcttacccatcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga                                >  2:457770‑M2/1‑20 (MQ=255)
                                                                                tGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagta                     >  1:1592690‑M2/1‑20 (MQ=255)
                                                                                 gCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgac                               <  2:222329‑M2/89‑71 (MQ=255)
                                                                                     aGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgaaaaaa                           >  2:3651772‑M2/1‑15 (MQ=255)
                                                                                      ggggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaa                          <  2:4464028‑M2/89‑76 (MQ=255)
                                                                                        ggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccag             >  1:4359064‑M2/1‑12 (MQ=255)
                                                                                         gAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacag                       <  2:2910928‑M2/89‑79 (MQ=255)
                                                                                         gAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacag                       <  2:539711‑M2/89‑79 (MQ=255)
                                                                                            gCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtat                    >  2:4125625‑M2/1‑8 (MQ=255)
                                                                                             cGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaa        <  1:4939067‑M2/100‑94 (MQ=255)
                                                                                             cGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaa        >  1:952835‑M2/1‑7 (MQ=255)
                                                                                             cGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaa        <  1:3191119‑M2/100‑94 (MQ=255)
                                                                                              gTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaa       <  1:4729725‑M2/100‑95 (MQ=255)
                                                                                              gTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatca                  >  2:3135598‑M2/1‑6 (MQ=255)
                                                                                              gTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatca                  >  2:1362136‑M2/1‑6 (MQ=255)
                                                                                                gAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaac                >  2:202634‑M2/1‑4 (MQ=255)
                                                                                                gAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATg     >  1:3001674/1‑100 (MQ=255)
                                                                                                 aaCtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaacc               >  2:2624255‑M2/1‑3 (MQ=255)
                                                                                                 aaCtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaacc               >  2:811319‑M2/1‑3 (MQ=255)
                                                                                                  aCtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaacca              >  2:704866‑M2/1‑2 (MQ=255)
                                                                                                   ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaacccc  >  1:3100116‑M2/1‑1 (MQ=255)
                                                                                                   ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccag             <  2:1064560‑M2/89‑89 (MQ=255)
                                                                                                   |                                                                                                   
GCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTG  >  NC_000913/572372‑572570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.