New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1426409 =	53 (1.030)	3 (0.060)	3/246	NT	5.7%	intergenic (+429/‑45)	ydaY/ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
	?	NC_000913	1426431 =	50 (1.030)					intergenic (+451/‑23)	ydaY/ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA

GGAGCAGTGTGTGTAGTTGTTAATTACGTACACTCTGTTACAGAGATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCTGACAATCTGACCTCCTCATTAGTCAAA  >  NC_000913/1426273‑1426543                                                                                                                                         |                                                                                                                                       gcagtttccccagcctgcgtcattttgactaatgaggaggtcagattgtcagcattatttttcgctccagtgctatcaataattattgcgagacgcgaggtttgctctgccatttattaaaactcctgacaacaaaAAACCCa                                                                                                                                  >  2:631793‑M1/137‑143 (MQ=255)      aGTGTGTGTAGTTGTTAATTACGTACACTCTGTTACAGAGATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTcg                                                                                                                             <  2:999742/143‑1 (MQ=255)        tgtgtgtAGTTGTTAATTACGTACACTCTGTTACAGAGATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGTAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTcgcg                                                                                                                           <  2:43543/143‑1 (MQ=255)                   gttAATTACGTACACTCTGTTACAGAGATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGtttttt                                                                                                                <  1:946445/143‑1 (MQ=255)                     cattttgactaatgaggaggtcagattgtcagcattagttttcgctccagtgctatcaataattattgcgagacgcgaggtttgcgctgccatttattaaaactcctgacaacaaaAAACCCACTTCGCGGTGGGTTTTttgt                                                                                                              >  2:612032‑M1/117‑143 (MQ=255)                      aaTTACGTACACTCTGTTACAGAGATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTttgtt                                                                                                             <  1:553987/143‑1 (MQ=255)                            gTACACTCTGTTACAGAGATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGGCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTTAgg                                                                                                       >  2:823998/1‑143 (MQ=255)                                acTCTGTTACAGAGATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGtt                                                                                                   >  1:575830/1‑143 (MQ=255)                                    tGTTACAGAGATGTGAGGGTGTCTTTAATTAAATCGATTATGCTCCTGGAGAAAAGGATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGACTCCCACGTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTtaa                                                                                               <  2:218468/143‑1 (MQ=255)                                        aCAGAGATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATaaa                                                                                           <  1:430794/143‑1 (MQ=255)                                        aCAGAGATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATaaa                                                                                           >  2:517428/1‑143 (MQ=255)                                         cAGAGATGTGATGGTGTCTTTAATTAGATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTCTGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAAt                                                                                          <  1:1004388/143‑1 (MQ=255)                                         cAGAGATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTCTTTGTTGTCAGGAGTTTTAATAAAt                                                                                          <  1:455225/143‑1 (MQ=255)                                          agagATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAAtt                                                                                         >  1:833409/1‑142 (MQ=255)                                              aTGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCag                                                                                     >  1:772278/1‑143 (MQ=255)                                                 tcagcattatttttcgctccagtgctatcaataattattgcgagacgcgaggtttgctctgccatttattaaaactcctgacaacaaaAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGtttt                                                                                                 <  2:811736‑M1/40‑1 (MQ=255)                                                 tcagcattatttttcgctccagtgctatcaataattattgcgagacgcgaggtttgctctgccatttattaaaactcctgacaacaaaAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGtttt                                                                                                 >  1:811736‑M1/89‑128 (MQ=255)                                                  gATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCa                                                                                 <  1:538257/143‑1 (MQ=255)                                                  gATGGTGTCGTTGATTTAATGGATGATGCTCCTGGAGAATAGCATTGCGTGGCCTCGTAATCGCTATGTCTACTATTATTTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCa                                                                                 <  2:77025/143‑1 (MQ=255)                                                   aTGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATCGCAGAGCaa                                                                                >  2:803515/1‑143 (MQ=255)                                                        ggcTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTc                                                                           <  1:591174/141‑1 (MQ=255)                                                               cttaaATCGATGCGGCGCCTGGAGAGAAGCATTGCGTGGCCTCGTAATCGCTCTATCTACTATTATGTCGCCGGCAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGtctc                                                                    <  1:135152/142‑1 (MQ=255)                                                               attaaATCTATGATGCTCCTCGAGAAAAGCATTGCGTCGCCTCGTAATCGCTATGTCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGtctc                                                                    <  2:691312/143‑1 (MQ=255)                                                               attaaAGCGATGATGCTCCTTGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGtctc                                                                    <  2:271418/143‑1 (MQ=255)                                                                ttaaATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCg                                                                   >  1:565598/1‑143 (MQ=255)                                                                    aTCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTGTAATAAATGGCAGAGCAAACCTCGCGTCTCGCaat                                                               >  1:984279/1‑143 (MQ=255)                                                                     tagatgatGCTCCGGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCaata                                                              <  1:885244/141‑1 (MQ=255)                                                                     tCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTTTTTTTTGTTTTAATACATGGCAGAGCAAACCTCGCGCCTGGcgttg                                                              >  2:66433/1‑139 (MQ=255)                                                                          gatgCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATCATGTCGCCTGAAACCCACTTCGCGGTGGG‑TTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAattagt                                                        >  2:921945/1‑141 (MQ=255)                                                                           atgCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCATGAAACCCACTGCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAattatt                                                        >  2:667994/1‑143 (MQ=255)                                                                             gCTCCTGGAGAGAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAATCCCACTTCGCGTTGGGTTTTTTGTTGTCTGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGa                                                      <  2:359730/143‑1 (MQ=255)                                                                                tctagagaAAAACATTGCCTCGCGTGTTTTTCCCCATATCTACTATTTTATCGCCAGAAACCCACTTCGCGTTGGGTTTTTTCTTATCAGAAGTTTTAATAAATGGCAAAGCAAACCTCGCGTCTCGCAATAATTATTAATAg                                                   <  2:933238/139‑1 (MQ=255)                                                                                  tGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCCGGAGTCTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATACTTATCGATAGCa                                                 >  2:257177/1‑143 (MQ=255)                                                                                       aaaaGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAATCCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAACCCAAGCATCTCGCGATAATTATTGATAGCACTGGa                                            <  2:889018/143‑1 (MQ=255)                                                                                       aaaaGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGa                                            <  2:17566/143‑1 (MQ=255)                                                                                       aaaaGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGa                                            <  1:301589/143‑1 (MQ=255)                                                                                       aaaaGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGa                                            <  1:863403/143‑1 (MQ=255)                                                                                       aaaaGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGa                                            <  1:517428/143‑1 (MQ=255)                                                                                           gCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGa                                        >  1:586372/1‑143 (MQ=255)                                                                                              ttGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATACTTGTTGATAGCACGGGAGCGgaaa                                     >  1:64864/1‑143 (MQ=255)                                                                                              ttGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGaaaa                                     <  2:586372/143‑1 (MQ=255)                                                                                                  gTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAaataa                                 <  2:216898/143‑1 (MQ=255)                                                                                                      ccTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGACATATATTGCt                             >  2:868640/1‑143 (MQ=255)                                                                                                      ccTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTGAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCt                             >  1:532380/1‑143 (MQ=255)                                                                                                        tCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCTGa                           >  2:182533/1‑143 (MQ=255)                                                                                                        tCGTAATCGCTATATCGACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCTGGTGTTTTATAAAATGGTAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAaataattattg                           <  2:359670/143‑6 (MQ=255)                                                                                                            tagcGCTATATCTACTATTATGTCGCCTGAAACCCACGTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCTGACAAt                       <  2:643016/140‑1 (MQ=255)                                                                                                                gCTATATCTACTCTTATGCCGCCTGCAACCCACTTCGCTGTGGGTTTTTTGTTGTCAGGAGTTTTAATATATGGCAGTGCAAACCTCGCGTCTCGCAATAATTTTTGATAGCACTGGAGCGAAAAATAATGCTGACAATCTGa                   <  1:345414/143‑1 (MQ=255)                                                                                                                gCTATATCGACTAGTATGTCGCCTGAAACCCACTTCGCGGGGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCTGACAATCTGa                   <  1:258539/143‑1 (MQ=255)                                                                                                                 cTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCTGACAATCTgcc                  >  1:857574/1‑141 (MQ=255)                                                                                                                 cTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCTGACAATCTGAc                  <  2:683043/143‑1 (MQ=255)                                                                                                                      tCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCTGACAATCTGAcctcct             >  1:974931/1‑143 (MQ=255)                                                                                                                      tCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACATCGGGGCCATACAAAATTATTGATAGCACTGGAGCGAAAAATAATGCTGACAATCTGAcctcct             >  1:232101/1‑143 (MQ=255)                                                                                                                      tCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGGTTTTTGTTGTCAGGAGTGTACAGAAAAGACAAAGAATGCGTCGTGTGTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCTGACAATCTGAcctcct             >  1:235175/1‑143 (MQ=255)                                                                                                                         actaTTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATCGCACTGGAGCGAAAAATAATGCTGACCATCTGACCTCCTCac          >  2:265612/1‑142 (MQ=255)                                                                                                                                tGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCTGACAATCTGACCTCCTCATTAGTCaa   <  2:273265/143‑1 (MQ=255)                                                                                                                                 gTCGCCGGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCTGACAATCTGACCTCCTCATTAGTCaaa  <  2:563197/143‑1 (MQ=255)                                                                                                                                         |                                                                                                                                       GGAGCAGTGTGTGTAGTTGTTAATTACGTACACTCTGTTACAGAGATGTGATGGTGTCTTTAATTAAATCGATGATGCTCCTGGAGAAAAGCATTGCGTGGCCTCGTAATCGCTATATCTACTATTATGTCGCCTGAAACCCACTTCGCGGTGGGTTTTTTGTTGTCAGGAGTTTTAATAAATGGCAGAGCAAACCTCGCGTCTCGCAATAATTATTGATAGCACTGGAGCGAAAAATAATGCTGACAATCTGACCTCCTCATTAGTCAAA  >  NC_000913/1426273‑1426543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.