New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3423665 =	NA (NA)	5 (0.100)	3/258	NT	9.4%	intergenic (‑10/+3)	thrV/rrfD	tRNA‑Thr/5S ribosomal RNA
	?	NC_000913	= 4171803	49 (0.950)					intergenic (+47/‑254)	rrfB/murB	5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase

GCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCA  >  NC_000913/3423524‑3423802                                                                                                                                              |                                                                                                                                          gcgcTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAAttt                                                                                                                                          >  1:367410/1‑143 (MQ=255) gcgcTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAAttg                                                                                                                                          >  1:279581/1‑142 (MQ=255)   gcTACTGCCGCCAGACAAATTGTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGa                                                                                                                                        <  2:665609/143‑1 (MQ=255)        tGCCGCCAGACAAATTCTTTGCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACGGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCt                                                                                                                                   <  1:176483/143‑1 (MQ=255)          ccgcaAGACAAATTCGTTTCTAATCTCCCGAACTTTAACCTAAAAAGTGGGGCTGACACCCAGAGTCGAACGGGGGACATCAATCTTATCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGTTAAATTTGATGCCTgg                                                                                                                                 <  1:520193/143‑1 (MQ=37)                gACAAGTTCTTGTCTAATCTTCCGAACTTTAACCTAAAAAGTGGTGCTGAGACCCAGAGTCGAACTGGGTGCCTCACCCTTACCAAGTGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTc                                                                                                                           <  2:613591/143‑1 (MQ=37)                gACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTc                                                                                                                           >  1:180118/1‑143 (MQ=255)                    aaTTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTa                                                                                                                       <  2:41984/143‑1 (MQ=255)                       tCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTActc                                                                                                                    >  1:300404/1‑143 (MQ=255)                        cTTTTCTAATCTGCCGAACTTTAACCTAAAAGGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCAGATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTActct                                                                                                                   <  1:302261/143‑1 (MQ=255)                         ttttCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGCTACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACtctc                                                                                                                  <  2:621400/143‑1 (MQ=255)                         ttttCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTCCCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCCCGCTAAATTTGATGCCTGGCAGTTCCCTCCtctc                                                                                                                  >  1:876471/1‑143 (MQ=255)                            tCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTActctgcca                                                                                                               >  2:135824/1‑139 (MQ=255)                               aaTCGGCCGCACTTTGACCTAAACAGTGGTGCTGATACCCAGAGTCGATCTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATgg                                                                                                            <  2:844866/143‑1 (MQ=37)                                aTCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCCAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATggg                                                                                                           >  2:303615/1‑143 (MQ=255)                                                 cTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATCTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCa                                                                                          >  1:634357/1‑143 (MQ=255)                                                  tAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCAt                                                                                         >  1:857350/1‑143 (MQ=255)                                                  tAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGAGGAGACCCCACAATACCAt                                                                                         >  1:540441/1‑143 (MQ=255)                                                    aaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTAACAACTGAGCAATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGCGGCCCCAGACTACCATCg                                                                                       >  1:379992/1‑143 (MQ=37)                                                              cTGATACCCAGGGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTAAGCCATATCAGCACACTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACGCTACCACCGGCGCTACgcc                                                                             >  1:433013/1‑141 (MQ=37)                                                                      cAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATCCCTGGCAGTTGCCTACTCTCGCATGGGGAGACCCCTCAAGACCATCGGCGCTACGGCTTTTCACt                                                                     >  2:582720/1‑143 (MQ=37)                                                                              aaCTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGCGACCCCACACTCCCATCGGCGCTACGGCGTCTCACTTCTGACtt                                                             >  2:569971/1‑143 (MQ=255)                                                                                 tGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCgg                                                          >  2:94457/1‑143 (MQ=255)                                                                                   gggACCTCACCCTTACCAAGGGTGTGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGGCTCACTTCTGGGTTCgggc                                                        >  1:987111/1‑141 (MQ=255)                                                                                      gccgtaCCCCTGCCAAGGGGGCGGTCTGACACCTGAGACTGATCAGTACGCTAAATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATgg                                                     <  2:385839/138‑1 (MQ=14)                                                                                         tCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTCCGCCGTTTCACTTCTGCGTTCCGCGTGTGGt                                                  >  1:399439/1‑143 (MQ=21)                                                                                                              tctACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTCAGTTCGGCATGGGGTCAGGTGGGGGCAACGCGCTag                             >  2:1008360/1‑142 (MQ=255)                                                                                                               ctACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGCGTTCGGCCTGGGGCCAGGTGGGACCACCGCGCTACg                            >  1:380161/1‑143 (MQ=255)                                                                                                                       tGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAg                    <  1:303615/143‑1 (MQ=255)                                                                                                                       ggacacATATCAGCACGCTAAATGTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCGACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAg                    <  2:399439/138‑1 (MQ=255)                                                                                                                         gtccATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTTCTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGc                  <  2:300404/141‑1 (MQ=255)                                                                                                                                 cAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATGGCCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGCGGGACGGCCGCGCTACGGCCGCCATGCAAATTCTg          >  1:272475/1‑143 (MQ=11)                                                                                                                                  aGCACGGTAAAGTTGATGCCTGGCAGTTCCCTGCTCTCGCATGTGGAGACCCCACACTACCACCGGCGCTACGGCGGTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGt         <  2:367410/143‑1 (MQ=11)                                                                                                                                       gCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACGACCGCGCTACGGCCGCCAGGCAAATTCTGCTTTAt    >  2:814655/1‑143 (MQ=17)                                                                                                                                       gCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTGTTAt    >  1:252638/1‑143 (MQ=17)                                                                                                                                         tAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGACTTCGGCCTGGGGCCAGCCCGGACCCCCGCGCTACGGCCGCCAGGCAAACTCTGTTCTATCa  >  1:426902/1‑143 (MQ=11)                                                                                                                                         tAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCAATTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCa  >  1:399783/1‑143 (MQ=14)                                                                                                                                         tAAATTTGATGCCTGGCAGTTCCCTACTATCGCCTGGGGCGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCCAACTCCGTTCTATCa  >  2:74494/1‑143 (MQ=11)                                                                                                                                              |                                                                                                                                          GCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCA  >  NC_000913/3423524‑3423802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.