New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2664279 =47 (0.910)3 (0.060) 3/252 NT 6.0% intergenic (+34/‑111) suhB/yfhR inositol‑phosphate phosphatase/putative peptidase
?NC_000913 2664292 = 48 (0.970)intergenic (+47/‑98) suhB/yfhR inositol‑phosphate phosphatase/putative peptidase

TGACCGGTAACATCGTTGCTGGTAACCCGCGCGTTGTTAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATGGCACTGCCAGTGAACAAACGCGTTCCCAAAATTCTGTTT  >  NC_000913/2664154‑2664431
                                                                                                                                          |                                                                                                                                            
tGACCGGTAACATCGTTGCTGGTAAACCGCGCGTTGTTAAAGCCATGCTGGCGAACATGCGTGACGAGTGAAGCCGCGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCACCCTCGCCCCTCAGGCGCTAtt                                                                                                                                          >  2:7485/1‑143 (MQ=255)
cgcccgtttgttcgctggcagtgccatcacctctccttgcggcttctttatcatccattaatcggggaaagatggtgggagagtgacgaaagaaagtaaagcagtgaggaagtatttcggaatagCGCCTTTCAGGCGCTAtt                                                                                                                                          >  2:370506‑M1/126‑143 (MQ=255)
     ggTACCATCGGTGCTGGTAACCCGGTCGTTGTTAAAGCCATGCTGGGGAGCATGCGTGACGGGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGaa                                                                                                                                     <  2:985752/143‑1 (MQ=255)
       tAACATCGTTGCTGGTAACCCGCGCGTTGTTAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACACTCTGACGCGTTAATGACTCAGGCGCGTGATATCACTCACCAGCCCCCGCCCTTCAGGCGTTATTCCgtact                                                                                                                                   >  1:420907/1‑139 (MQ=255)
        accATCGTGGCTGGGAACCCGCGCGTTGTTAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATa                                                                                                                                  <  2:261386/141‑1 (MQ=255)
           aTCGTTGCTGGTAACCCGCGCGTTGTTAAAGCCATGCTGGCGAACATGCGTAACGAGTTAAGCGACGCTATGAAGCGTTAATAACTCAGACGGGTGATATCACTCACCCGCCCTCGCATTTCAGGCGCTATTCCGAAATACtt                                                                                                                               >  1:434619/1‑143 (MQ=255)
               ttGCTGGTAACCCGCGCGTTGTTAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTGTTCCGAACTGCTTccgc                                                                                                                           >  1:55271/1‑141 (MQ=255)
               ttGCTGGTAACCCGCGCGTTGTTAAAGCCATGCTGACGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCCTTCAGGCGCTATTCCGAAATACTTCCTc                                                                                                                           >  2:310890/1‑143 (MQ=255)
                ggCTGGTAACCCGCGCGTTGTCGAAGCCATGCTGGCGGACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCCTTCAGGCGCTATTCCGAAATACTTCCTCa                                                                                                                          <  2:72963/142‑1 (MQ=255)
                      tAACGCGCGCGTTGTTAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCtt                                                                                                                    <  1:344192/143‑1 (MQ=255)
                        aCCCGCGCGTTGTTAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTa                                                                                                                  <  1:808953/143‑1 (MQ=255)
                           cgcgcgTTGTTAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTActt                                                                                                               >  1:77251/1‑143 (MQ=255)
                             cgcgTTGTTAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTActttc                                                                                                             >  1:845669/1‑143 (MQ=255)
                               cgTTGTTAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTActttctt                                                                                                           <  2:568034/143‑1 (MQ=255)
                                gttgttAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGAGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTActttcttt                                                                                                          >  2:964016/1‑143 (MQ=255)
                                    ttgcgacttctttatcatccattaatcggggaaagatggtgggagagtgacgaaagaaagtaaagcagtgaggaagtatttcggaatagCGCCTTTCAGGCGCTATTCCGAAATACTTCCTc                                                                                                                           <  1:392581‑M1/33‑1 (MQ=255)
                                    ttgcgacttctttatcatccattaatcggggaaagatggtgggagagtgacgaaagaaagtaaagcagtgaggaagtatttcggaatagCGCCTTTCAGGCGCTATTCCGAAATACTTCCTc                                                                                                                           >  2:392581‑M1/90‑122 (MQ=255)
                                     tAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCa                                                                                                     <  1:442639/143‑1 (MQ=255)
                                      aaaGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATGCCGAAGTACTTCCTCCCCGCTGTACTCTCTTTCGTccc                                                                                                    >  1:1004201/1‑141 (MQ=255)
                                               cTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCccacc                                                                                           <  1:482377/143‑1 (MQ=255)
                                               cTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGCGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATCCTTCCTCCCCGCTTTCCTTCCTCTCGTCACCCTccaccc                                                                                           >  1:250948/1‑139 (MQ=255)
                                                tGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCccacca                                                                                          <  1:766709/143‑1 (MQ=255)
                                                    gAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTCCTTTCTTTCGTCACTGTCCTACCATCtt                                                                                      >  1:443566/1‑143 (MQ=255)
                                                     aaCATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCttt                                                                                     >  1:24246/1‑143 (MQ=255)
                                                       cATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTcc                                                                                  <  1:203125/143‑1 (MQ=255)
                                                         tGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGCCTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTcccc                                                                                <  1:292581/143‑1 (MQ=255)
                                                           cGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTccccca                                                                              >  2:536392/1‑141 (MQ=255)
                                                              gACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCAGTTCAGGCGCGGTTCAGTAATACTTCCCCACCTCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTcccccccta                                                                           >  2:883711/1‑138 (MQ=255)
                                                                cGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAACTACTTCCTCGCTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAAt                                                                         <  1:544203/143‑1 (MQ=255)
                                                                   gTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGga                                                                      <  1:516720/143‑1 (MQ=255)
                                                                   gTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGga                                                                      <  2:557453/143‑1 (MQ=255)
                                                                      aaGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCATCACTCTCCCACCATCTTTCCCCGATTACTGgatga                                                                   >  2:248769/1‑143 (MQ=255)
                                                                               tctGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGt                                                          >  1:543439/1‑143 (MQ=255)
                                                                                atgcaGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTc                                                         <  2:616026/139‑1 (MQ=255)
                                                                                 tGAAGCGTTACTGCCTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCCCCATCTTGCCCCGATTAATGGATGATAAAGAAGTCg                                                        <  2:410719/143‑1 (MQ=255)
                                                                                  gAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGc                                                       >  2:914397/1‑143 (MQ=255)
                                                                                    aGCATTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCaa                                                     <  1:842747/143‑1 (MQ=255)
                                                                                          aaTGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACGATCTTTCCCCGATAAATGGATGAGAAAGAAGTCGCAAGGAAAg                                               >  1:632946/1‑143 (MQ=255)
                                                                                          aaTGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAg                                               <  1:446126/143‑1 (MQ=255)
                                                                                            tggcTCAGGCGCGTGCTCTCTCTCGCCCGCCCTCGCCTTTCATGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTCCTTTCGTCACTCTCCCACCATCTTACCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGt                                             <  2:120151/140‑1 (MQ=255)
                                                                                              aCTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTCTTCCGAAATACTTCCTCACTGCTTTACTTCCTTTCGTCGCTCTTTCCCCAGCCCCCCCCGCTTAATGGATGCTAAAGAAGCCGCAAGGAAAGGTTa                                           >  1:961101/1‑143 (MQ=255)
                                                                                              aCTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGACACTCTCCCACCATCTTTCCCCGATTAATGGATGCTAAAGAAGTCGCAAGGAACGGTTa                                           >  2:499668/1‑143 (MQ=255)
                                                                                                tCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATg                                         <  1:229321/143‑1 (MQ=255)
                                                                                                tCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTGTCTTTCGTCACTCTCCCACCATCTTTCCCCGACTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATg                                         <  1:657307/143‑1 (MQ=255)
                                                                                                       tgTGATTTCTCTCACCCGCCCTCGTCTTTCAGGCGTTATTCCGCAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCGTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATGGCACTGc                                  <  1:816253/142‑1 (MQ=255)
                                                                                                       ggTGATCTCCCTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCCCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATCAAGAAGTCGCAAGGAAAGGTTATGGCACTGc                                  <  2:617209/143‑1 (MQ=255)
                                                                                                        gTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAGGGTTATGGCACTGcc                                 >  2:423127/1‑143 (MQ=255)
                                                                                                         gaggaagtatttcggaatagcgcctgaaaggcgCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCaa                                                     >  2:392581‑M2/34‑122 (MQ=255)
                                                                                                         gaggaagtatttcggaatagcgcctgaaaggcgCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCaa                                                     <  1:392581‑M2/89‑1 (MQ=255)
                                                                                                              tcactcacCCGCCCTCGCCTTTCAGGCGCTACAACGAACTACTTCCGCTCTCCTTTACTTTCTCTCGACACTCTCCCACCATCTTTCCACGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATGGCACTGCCAGTGaa                           >  1:796693/1‑143 (MQ=255)
                                                                                                                actcacCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATGGCACTGCCAGTGAAcc                         >  1:31572/1‑142 (MQ=255)
                                                                                                                        gCCCTCGCCTTTCAGGCGCTATTCCGAAATCCCTCCTTCCTGCTGTACTTGATTTTGCCACTCTCCCACAAGCTGTCTCCGGATACATTACTGTGAAGAAGTCGCAATGAAAGGTTATGGCACTGCCAGTGAACAAACGCGtt                 <  2:988921/143‑1 (MQ=255)
                                                                                                                        aatagcgcctgaaaggcgCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGCCGCAAGGAGAGGTGATGGCACTGCCAGCGAAcaaacgggcg                 >  2:370506‑M2/19‑139 (MQ=255)
                                                                                                                         cccTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATGGCACTGCCAGTGAACAAACGCGTTc                <  1:972408/143‑1 (MQ=255)
                                                                                                                          ccTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATGGCACTGCCAGTGAACAAACGCGTTcc               >  2:68561/1‑143 (MQ=255)
                                                                                                                              GCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATGGCACTGCCAGTGAACAAACGCGTACCCaaa           <  1:107106‑M1/143‑1 (MQ=255)
                                                                                                                                CTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATGGCACTGCCAGTGAACAAACGCGTTCCCAAAAt         <  1:666250‑M1/143‑1 (MQ=255)
                                                                                                                                CTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTCCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATGGCACTGCCAGTGAACAAAAGCGTTACCAAAAt         <  1:546062‑M1/143‑1 (MQ=255)
                                                                                                                                       gcgCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATGGCACTGCCAGTGAACCAACGCGTTCCCAACATTCTGttt  >  1:216516‑M2/4‑143 (MQ=255)
                                                                                                                                          |                                                                                                                                            
TGACCGGTAACATCGTTGCTGGTAACCCGCGCGTTGTTAAAGCCATGCTGGCGAACATGCGTGACGAGTTAAGCGACGCTCTGAAGCGTTAATGACTCAGGCGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCAAGGAAAGGTTATGGCACTGCCAGTGAACAAACGCGTTCCCAAAATTCTGTTT  >  NC_000913/2664154‑2664431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.