| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,466,345 | T→C | 17.2% | pseudogene (954/2518 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,466,345 | 0 | T | C | 17.2% | 62.2 / 4.9 | 42 | pseudogene (954/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base T (12/18); new base C (3/4); total (18/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATA > NC_000913/1466204‑1466487 | aaGCGCCACGGTGGACAACAAGGGCACCAGGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATg < 1:321850/142‑1 (MQ=255) aCGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGGGGCACCGGCACCCAGATTAAGGGtgatga > 2:871872/1‑143 (MQ=255) aCGGCGGAGAACAAGGGCCCCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtgatga < 1:705880/143‑1 (MQ=255) gATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCCTGGGTATCCAGATCGACGGTGACAAGGCCATAGTCAACAACGAGGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGAGTAATGGTGATGACGCCAc > 1:93437/1‑143 (MQ=17) gATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCCCCCAGAGTAATGGTGATGACGGCAc > 1:79264/1‑143 (MQ=255) gATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATCGACGGCGACAAGGCGATCCTCAACAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGCCACCCAGATTAACGGGGACGAcccccc > 2:91182/1‑141 (MQ=11) aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCGTCGTCAATAACGAAGGCGAGCGCACCATCACCCCCGGCGGCACCGGCACCCAGGTTAATGGTGATGTCGCCACGGCa > 1:911429/1‑143 (MQ=18) aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTAAATAACGAAGGCGAGAGCACCATCACCAAAGATGGCACCGGCACCCAGATTGAGGGTGATGAGGCCACGGCa > 1:234567/1‑143 (MQ=18) atggCCCCATGACCGTCACGGGTCCGGAGTCCATGGGTATCCAGATCGACGGTGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGCTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaac < 1:446891/141‑1 (MQ=18) aGGGCACCATGACCGTCACCGATCCGGAGTCGATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaac < 2:433591/143‑1 (MQ=255) gACCGTCACCGATCCGGGGACCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCa < 2:541521/143‑1 (MQ=255) tCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTAAATATTGAAGTCTTGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCACAacc > 1:278033/1‑143 (MQ=21) ccGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGa < 2:833296/143‑1 (MQ=255) ccATGGGTATCCAGATCGACGGTGACAAGGACATCGTCAATAACGAAGGCGATAGCACCATAAACAACGGTGGAACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAg < 1:949196/143‑1 (MQ=18) ccATGGGTACCCACATCGACGGTGACCAGGCCATCGTCACTAACGCAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATTGTGATGACGCCACGGCAAACAACAACGGCAGAACCACCGTTGACGGCAAg < 2:385965/143‑1 (MQ=18) ccATGGGGATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAg < 2:98431/143‑1 (MQ=255) cATGGGTATCCAGATCGACGGTGACAAGGCCATCGACAATAACGAAGGCGAGAGCGCCAGCACGAACGGTGGCACCGGCACCCAGAAGAATGGTGATGAGGCCACGGCCGGGAACAACGGGAAAACCACCGGTGACGGCAAgg > 2:415984/1‑143 (MQ=25) gTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGc > 1:7490/1‑103 (MQ=255) gTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGc < 2:7490/103‑1 (MQ=255) tATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCa < 1:888787/143‑1 (MQ=255) aTCCAGATCGAGGGTGACAAGGCCAGCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAc < 2:186633/143‑1 (MQ=255) aTCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAc < 2:278033/143‑1 (MQ=255) ccAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCg > 1:743028/1‑143 (MQ=255) caggacGACGGTGACAAGGCCATCGTCAAAAACGAAGGCAAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCgg < 2:229424/138‑1 (MQ=255) gATGGACGGTGACAAGGCCATCGTCAAGAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTa < 2:186597/143‑1 (MQ=255) cGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGCCGGCAAGGATGCCCGCGGTACgg > 1:596785/1‑143 (MQ=255) aCGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACGATCACCAACGGTTGCACCGGCACCCAGATTAAGGGCGATGACGCCACGCCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAGTCCACCGGTACCGac > 2:456104/1‑142 (MQ=17) gTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCaaaa > 1:444576/1‑105 (MQ=255) gTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCaaaa < 2:444576/105‑1 (MQ=255) gCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGACGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCACGGCTTCCACCGGTACGGACATCAACGGtaa > 2:765420/1‑143 (MQ=255) aTCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGtaataa < 2:968544/143‑1 (MQ=255) ccGTGAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCCGAGAGGCGCTAAGTAATGCTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAAc < 1:427181/142‑1 (MQ=14) aaGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAGGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTAtt < 1:939833/143‑1 (MQ=255) gCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCg > 1:3726/1‑105 (MQ=255) gCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCg < 2:3726/105‑1 (MQ=18) gagaGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGACACGGCATACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCGACGGCAATAACGGAAAGGTTATTCAGGa > 1:583260/1‑143 (MQ=14) cATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGCAATCGCCGGCAATAGCGGAAAAGTGATTCAGGACGGCGCTc > 2:929318/1‑143 (MQ=11) aTCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCt < 2:891452/143‑1 (MQ=255) cGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCa < 1:887266/143‑1 (MQ=255) gTGGCACCGGCACCCAGATTAACGGTGATGACGCCACGGc > 2:455885/1‑40 (MQ=255) cataTTAATGGTGAGGACGCCACGGCAAACAACAACGGCAAGACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACgg < 1:871872/140‑1 (MQ=255) aTTAAGGGTGATGACGCCACGACAAACACCAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTAt < 1:754845/143‑1 (MQ=255) tGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGata > 1:587410/1‑143 (MQ=255) | CAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATA > NC_000913/1466204‑1466487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |