| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,352,800 | C→A | 62.0% | V76F (GTC→TTC) | arcB ← | sensory histidine kinase ArcB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,352,800 | 0 | C | A | 62.0% | 28.9 / 44.6 | 49 | V76F (GTC→TTC) | arcB | sensory histidine kinase ArcB |
| Reads supporting (aligned to +/- strand): ref base C (9/10); new base A (14/16); total (23/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.10e-01 | |||||||||||
GAACGGCAATTTCCTGATTTAGCTGGGCAATATTATCTTTTAACTGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACCACAATGGCAAGAACGACGAGG > NC_000913/3352662‑3352936 | gAACGGCAATTTCCTGATTTAGCTGGGCAATATTATCTTTTAACTGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGaccacc > 1:212260/1‑143 (MQ=255) ggCAATTTCCGGCTCTAGATTGTCTGTATTATCTTTTAACTGAACGTGGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCGCCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATa < 2:159743/143‑1 (MQ=255) tttCCTGATTTAGCTGGGCAATATTATCTTTTAACTGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACGCCTCCAGTTGCTCGACGACCACCGATAGAAAg < 1:674892/143‑1 (MQ=255) tttCCCGATTTAGCTGGGCAATATTATCTTTTAACTGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTGGACGAACACCGATAggacg > 2:795406/1‑139 (MQ=255) tCCTGATTTAGCTGGGCAATATTATCTTTTAACTGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTa < 2:480092/143‑1 (MQ=255) ccTGATTTAGCTGGGCAATATTATCTTTTAACTGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAg < 2:703711/143‑1 (MQ=255) tAGCTGGGCAATATTATCTTTTAACTGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGGTCGACAGCAGACCGccg > 2:480152/1‑142 (MQ=255) gaGCGGGGCAATATTATCTTTTAACTGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGccc < 2:76843/142‑1 (MQ=255) cTGGGCAATATTATCTTTTAACTGAACGTTGAGGCTCAAATCGCGCTCGCGCATTTCCTCCAGTTTTTGCACCAGCCGTGACAGCCGTTGTCGTGACTCCTCCCGTTGCACGCCGACCACCGCTCGCAAGTAAACCGCCCCCg > 2:132298/1‑143 (MQ=255) tGGGCAATATTATCTTTTAACTGACCGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACgg < 2:675842/143‑1 (MQ=255) attacCTTTTGACTGAACACGAGGGCTCAAATCGCGCGCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCa < 2:35048/143‑1 (MQ=255) tatCTTTTAACTGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGCCGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTACTCAGc > 2:696971/1‑143 (MQ=255) cTGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAaaga > 1:926822/1‑143 (MQ=255) tgcaCGTCGAGGCGCAACTCTCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTGGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACGAaagaa < 2:834164/140‑1 (MQ=255) tGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCGCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAaagaa < 1:963192/143‑1 (MQ=255) gAACGCTGAGGCTCAAATCGCGCTCGCGCAGCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGGCTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAaagaag < 1:379742/143‑1 (MQ=255) gCTCAAATCGCGCTCGCGCATCTCCTCCATTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGaa < 1:685369/143‑1 (MQ=255) cTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGCACGAAt > 2:190491/1‑143 (MQ=255) cTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTCGCAGTTACGCCTCCGGTTGCACGACGAACACCGATAGAAAGTAGACCGCCCCCGGCGTCATCAGCAAACCAACGAACACAGAACAAAt > 1:743476/1‑143 (MQ=255) tcgcgctcgcgcATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAGACCAAAGAAGATAGAACGGATAACATc > 1:265814/1‑143 (MQ=255) cgcactcgcgcGTCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACCAACACCGATAGCAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAGGAAGACAGAACCAACAACAGCa > 2:946555/1‑143 (MQ=255) cgctcgcgcATCTCCTCCAGTGTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGCACGAATAACATCAAt < 2:854567/143‑1 (MQ=255) tcgcgcATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGGCTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCt < 2:43546/143‑1 (MQ=255) tctcCGCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGAcc < 1:320148/143‑1 (MQ=255) cctccAGTTTTTGCTCCCGCCGTGACAGACGTTGCCGTGCATCCTCACCTTTCTCGACAAACATTATTATAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGa < 1:189361/143‑1 (MQ=255) cctccAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGa < 2:972837/143‑1 (MQ=255) ctggtttgGCACTAGGCGTGACAGACGGTCTCCTGACTCCGCCAGTTGCTCGACGAACACCGATAGATAGTAGTCCGCCCACGGCGTAATCGGCAATCCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCAt < 2:184465/139‑1 (MQ=255) aGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCGTTCGACCTGACCATg > 1:379345/1‑143 (MQ=255) tttttGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCCCGGCGTAATCAGCAAACCAAACAAGATAGAACGAAAAACATCAATGCTTTCGACCTGACCATgcc > 1:684988/1‑142 (MQ=255) gCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGCATAACCTCAATGCTTTCGACCTGACCATGCAGCAcc > 1:183456/1‑143 (MQ=255) aCCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCAt < 1:243292/143‑1 (MQ=255) ccAGCCGTGACAGACGTTGTCGTTACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATg < 2:247865/143‑1 (MQ=255) ccAGCCGTGACAGACGTTGTCGTGACTTCTCCAGGTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAACAAGATAGAACGAATAACATCAATGCTTTCGACCTGCCCATCCAGCACCGTg > 1:476715/1‑143 (MQ=255) ccAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTAACCATgaagcatcccg > 2:345348/1‑138 (MQ=255) aGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGt < 2:219434/143‑1 (MQ=255) ccGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAAACAGAACGAAAAACATCAATACTTTCGACCTGACCATGCAGCACCATGGTTa > 1:770798/1‑143 (MQ=255) cGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTAc < 2:606488/143‑1 (MQ=255) tGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCg > 1:530716/1‑143 (MQ=255) aCAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGcc > 1:323935/1‑143 (MQ=255) cGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTg > 1:845206/1‑143 (MQ=255) ttGTCGTGACTCCTCCAGTTGCTCGACGAACACCGATAGAAAGTAGCCAGAAAGATCCCCGATCATCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTa < 1:467878/143‑1 (MQ=255) tGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGCATAACATCAATGCTTTCGCCCTGACCACGAGGCACCATGGTCACCGCCATCTGGAc > 2:846777/1‑143 (MQ=255) tCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACca < 1:611736/143‑1 (MQ=255) cGTGACGCCGCCAGTTGCGCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCGGACCATGCAGCACCATGGTTACCGCCATTTGTACcac < 1:584/143‑1 (MQ=255) ctccgcCAGTTGCTCGACGAACACCGACAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACCACAATgg < 2:576637/143‑1 (MQ=255) ctccAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACCACAATGGCaa > 1:279298/1‑143 (MQ=255) ccAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACCACAATGGCAAGa > 1:393875/1‑143 (MQ=255) ttGCTCGACGAACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACCACAATGGCAAGAacgc > 2:510800/1‑142 (MQ=255) ttGCTCGACGAACACCGATAGAAAGTAGACCGCCCAAGGCGTAATCAGCAAACCAGAGAAGATAGAACGAATAACATAATTGCGGTCGACACGACAATACATTACCATGGATACCGCCATTTGTACCACGATGGCAAGAacga > 1:633823/1‑143 (MQ=255) cgacgaACACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACCACAATGGCAAGAACGACGAgg < 2:689339/143‑1 (MQ=255) | GAACGGCAATTTCCTGATTTAGCTGGGCAATATTATCTTTTAACTGAACGTTGAGGCTCAAATCGCGCTCGCGCATCTCCTCCAGTTTTTGCACCAGCCGTGACAGACGTTGTCGTGACTCCTCCAGTTGCTCGACGACCACCGATAGAAAGTAGACCGCCCACGGCGTAATCAGCAAACCAAAGAAGATAGAACGAATAACATCAATGCTTTCGACCTGACCATGCAGCACCATGGTTACCGCCATTTGTACCACAATGGCAAGAACGACGAGG > NC_000913/3352662‑3352936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |