Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,030,911 | C→T | 8.4% | V21I (GTA→ATA) | fadB ← | dodecenoyl‑CoA delta‑isomerase, enoyl‑CoA hydratase, 3‑hydroxybutyryl‑CoA epimerase, 3‑hydroxyacyl‑CoA dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,030,911 | 0 | C | T | 8.4% | 157.0 / 2.1 | 60 | V21I (GTA→ATA) | fadB | dodecenoyl‑CoA delta‑isomerase, enoyl‑CoA hydratase, 3‑hydroxybutyryl‑CoA epimerase, 3‑hydroxyacyl‑CoA dehydrogenase |
Reads supporting (aligned to +/- strand): ref base C (26/28); new base T (3/2); total (29/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACCGACGATAAAGGCTGCTTTGTTCGAACGCAGCAGCAGCCCTTTTAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTATTTTGTGTTAAAAA > NC_000913/4030771‑4031042 | aCCGACGATAAAGGCTCCTTTGTTCGAACGCAGCAGCAGCCCTTTTAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCa < 1:736728/143‑1 (MQ=255) cggggagggCTGCTTTGTTCGATCGCAGCAGCAGCCCTTTTAGATCTGATTGCTGTGCCAGCGCGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTGGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCg < 1:369446/136‑1 (MQ=255) cgaTGAGGGCTGCTTTGTTCGAACGCAGCAGCAGCCCTTTTAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCg < 2:974328/143‑1 (MQ=255) gggCTGCTTTGTTCGAACGCAGCAGCAGCCCTTGTAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATg < 1:561229/142‑1 (MQ=255) ggCTGCTTTGTTCGAACGCAGCAGCAGCCCTTTTAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTCTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGc > 2:436700/1‑143 (MQ=255) ttCGAACGCAGCAGCAGCCCTTTTAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGCTTATTAACTGAACCTGGGGCATCAAGTCCCAGTCTGGCAATGCCAACATccag > 2:176779/1‑143 (MQ=255) aCGCAGCAGCAGCCCTTTTAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGCCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCCATGCCATCTCccagccagc > 2:595136/1‑142 (MQ=255) tagcagcagcTCTTTTAGATCTGATTGCTGTTCTAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGGCGAGTTTATTAACTGAACCTGGGGCATCACATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCaa < 1:656948/142‑1 (MQ=255) cagcagcCCTTTTAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGt < 1:945131/143‑1 (MQ=255) ttttAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATATCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAgtgtgt > 1:326422/1‑143 (MQ=255) ttttAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATATCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGgtgt > 1:317794/1‑143 (MQ=255) ttttAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGgtgt > 1:902726/1‑143 (MQ=255) ttttAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCAAGGCTGTCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGgtca > 1:318351/1‑141 (MQ=255) tCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGCGGCTGGCCACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCCGTTCGGCAATGCCATCTTCCAGCCAGTCCAGGTCCCGGGTGTGGCCgtt > 1:665909/1‑143 (MQ=255) cTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTg > 1:616148/1‑143 (MQ=255) tGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGt > 1:586165/1‑143 (MQ=255) gATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTa > 1:596214/1‑143 (MQ=255) aTTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCCGTCAAGGTACAGGGTGTCGCCTTTGTaa > 1:784834/1‑143 (MQ=255) aTTGCTGTTCCAGCAAGCCGATGGCCTCGCCGAGGCTGGCGACAGTCGCAGAGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGCCAATGCCATCTTCCAGCCAGTCCAGGTGCGGGGTGTCGCCttggcga > 1:455186/1‑138 (MQ=255) ttGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTCTGTaag > 2:891632/1‑142 (MQ=255) tGCTGTTCCAGCACGCCGATGGCCTCGCCGACGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAg < 1:699918/143‑1 (MQ=255) gCTGTTCCAGCCCGCGGATGGCCTCGCCGGGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGc < 2:924321/143‑1 (MQ=255) cTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCa < 1:346727/143‑1 (MQ=255) tGTTCCGGCACGCGGATGGCGTCGCCGAGGCTGGCGCAGGACGCAGTGTCGCGTTTATCAACTGAACCTGGGGCATCAAATATCAGTTCAGCAATGCCATCCCCCAGCCCGTCCAGGGCCACGGGGTCACCCTCGTAATGCac > 2:84325/1‑142 (MQ=255) ttCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGt < 2:742895/143‑1 (MQ=255) gtgcAGCACGCGGATGGACTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTGTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGt < 2:103510/140‑1 (MQ=255) ccAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCa < 1:848109/143‑1 (MQ=255) ccAGCACGCCGATGGCCGCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCa < 1:649745/143‑1 (MQ=255) aCGCCGGTGGCCGCGGCGAGGCTGGCGGCGGTCGCAGTGTCGAGTTTGTTAACTGAACCTGGGGCCTCAAAGAGCAGGTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGtctc < 2:610833/143‑1 (MQ=255) cGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTcc < 1:116152/143‑1 (MQ=255) gCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCg > 1:984800/1‑143 (MQ=255) ccTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGCATCCGc > 1:637129/1‑143 (MQ=255) ccTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGc < 1:615677/143‑1 (MQ=255) tCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCaa < 2:666977/143‑1 (MQ=255) tCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCaa < 1:141398/143‑1 (MQ=255) tCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGCTACAGGGTGTCGCCTCTGTACAGCGTGTCAGACTCCTGATCCCGCaa > 2:243883/1‑143 (MQ=255) ccGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAGCTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCCTTGTCAAGCATGTCAGGCTCCTGACTCCGccgggt > 2:372696/1‑138 (MQ=255) ccGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCCGTCTCCTGAATCCGCAAGGt > 2:472209/1‑143 (MQ=255) cggCTCGCGACGGTCGCAGTGTCTAGCTTATTAACTGACCCTGCGGCATCAAATACCAGTTCGGCACTGCCATCTTCCAGCCAGTCCAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGAt < 2:688311/142‑1 (MQ=255) aCGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTa > 1:324461/1‑143 (MQ=255) cGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATCCCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTAc < 1:803087/143‑1 (MQ=255) gTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCCCGGTACAGGGTGTCGCCTTTGTAAAGGGTGTCAGTCTCCTGAGTCCGCGAGGTGATCTGGTGGTTccc > 1:18097/1‑142 (MQ=255) gCAGTGGCGAGTTTATTAACTGAACGTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGAt < 1:850711/143‑1 (MQ=255) cAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTCCCAGATg > 2:1004791/1‑143 (MQ=255) aGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGa < 1:825797/143‑1 (MQ=255) tCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCgg < 1:309580/43‑1 (MQ=255) tCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCgg > 2:309580/1‑43 (MQ=255) taGTTTATTAACTGAAGCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGaa < 1:760516/142‑1 (MQ=255) gAGTTTATTAACTGAACCTGGGGCATCAATTACCAGTTCTGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCATTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGaa < 2:308116/143‑1 (MQ=255) tttATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAACGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAgtg > 2:863813/1‑143 (MQ=255) ttaACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTa > 2:583323/1‑143 (MQ=255) ttaACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTa > 1:63328/1‑143 (MQ=255) gAACCTGGGGCATCAAATATCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTATTTtgt < 2:326422/143‑1 (MQ=255) gAACCTGGGGCATCAAATATCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTATTTtgt < 2:317794/143‑1 (MQ=255) gAACCTGGGGCATCAAATACCAGTTCGGCAATGCCCTCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTATTTtgt < 1:809025/143‑1 (MQ=255) aaCCTGGGGCATCAAATACCCGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTATTTtgtg < 1:294379/143‑1 (MQ=255) aaCCGGGGACATCAAAGACCAGTTCGGCAACGCCATCTGCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTATTTtgtg < 1:107245/143‑1 (MQ=255) cTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTATTTTGTGTTa > 1:469634/1‑143 (MQ=255) ggCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTATTTTGTGTTaaaaa < 2:578777/143‑1 (MQ=255) ggCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTATTTTGTGTTaaaaa > 2:265841/1‑143 (MQ=255) | ACCGACGATAAAGGCTGCTTTGTTCGAACGCAGCAGCAGCCCTTTTAGATCTGATTGCTGTTCCAGCACGCCGATGGCCTCGCCGAGGCTGGCGACGGTCGCAGTGTCGAGTTTATTAACTGAACCTGGGGCATCAAATACCAGTTCGGCAATGCCATCTTCCAGCCAGTCAAGGTACAGGGTGTCGCCTTTGTAAAGCATGTCAGTCTCCTGAATCCGCAAGGTGATCTGGTCGTACCAGATGAGTCGAAGTGTGTATTTTGTGTTAAAAA > NC_000913/4030771‑4031042 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |