Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 699,559 | A→G | 8.2% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 699,559 | 0 | A | G | 8.2% | 129.3 / 3.2 | 53 | intergenic (‑382/+15) | asnB/umpH | asparagine synthetase B/UMP phosphatase |
Reads supporting (aligned to +/- strand): ref base A (20/28); new base G (3/2); total (23/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.42e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.64e-01 |
TTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGAAAGCACCAGAATCGTCTCCAGACCTGCCTGGAAGCCG > NC_000913/699417‑699700 | ttGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCa < 2:1009534/143‑1 (MQ=255) tGTTCATGCCGGATGAGGCGTTAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAg < 1:781552/143‑1 (MQ=255) tCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCCCGTCCGCAGACg > 1:918458/1‑143 (MQ=255) aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTCCAGGAGCTGCGTAGGCCTGATAAGCCCAGCGCATCAGGCAGTTTGGCGTTTGTCATCAAAGCCAACCACGTCCGCAGCCggg > 2:45544/1‑141 (MQ=21) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGtt < 2:684652/143‑1 (MQ=255) ggATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGc < 2:837129/143‑1 (MQ=255) ggcgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCACTATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGTGCCTACCACGTCCGCAGACGTGGTTGCTATTCa < 2:122501/143‑1 (MQ=255) gcgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAAATCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTGCGCAGCCGTGGCTGCTCTTccg > 1:429416/1‑141 (MQ=21) gAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCACTCTAATGCATGAGCTGCGAAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGATCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATaa < 1:904597/143‑1 (MQ=25) aaCGCCTTATCCGGCCTACAAAATCATGAAAATAACTTAATTTTCAGGAGCTGCGTAGGCTTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAAc < 2:446655/143‑1 (MQ=25) ccTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCg > 2:271787/1‑143 (MQ=255) ggCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGc < 1:490153/143‑1 (MQ=255) ccTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGa < 2:12571/143‑1 (MQ=255) tACAAAAGCAGGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGCTAACGTCGATTTCAGCGACt > 2:221551/1‑143 (MQ=255) aaaGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCCGGCAGTTTGGCGTTTGTCATCAGACCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACg < 2:502519/143‑1 (MQ=255) aaaaTTCAATAGATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTACGATAACGGCTATTTCAGCGACTGACGGGTAAATc < 2:888578/143‑1 (MQ=37) tatatTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTgggg > 1:167753/1‑143 (MQ=255) gatggCAGGAGGTGCGGAGGCCGGATAAGCGTAGCGCATGAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGGCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCg < 2:514298/139‑1 (MQ=255) ttGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGa > 1:919843/1‑143 (MQ=255) gCACGAGCTGCGTAGGCCTGATAAGCGTAGCGCACCAGGCAGTTTCGCGCTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGaaa < 1:846658/143‑1 (MQ=255) cttgAGCTGCGTAGGCCTGATAAGCGGAGCGCATCAGGGAGGTTGGCGTTTGTCATCAGAGCCAACCACGTTCGCAGACGTGGTTGCTATACAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAg < 2:866875/140‑1 (MQ=255) cGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATCTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGt > 2:993708/1‑143 (MQ=255) tAGGCCTGATAGGCGTAGCGCATCAGGCAGTTTGGTGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCg < 2:90751/143‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCg > 1:589998/1‑143 (MQ=255) gggcTGATAGGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGat < 2:961537/140‑1 (MQ=255) atgCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTTGTTGCTATTCAGATAACGTCGATTTTAGCGACTGTCGTGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGa < 2:70505/141‑1 (MQ=255) aaGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGa > 2:527473/1‑143 (MQ=255) aaGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGa < 1:768918/143‑1 (MQ=255) agagTAGCGCATCAGGCAGTTTGGCGTTTGTTATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTTGATTTCAGCGACTGACGGTTAAATCCAGCTGGGGCTGAAAGGCATACTGTCGATATCGTCGAg < 2:771648/140‑1 (MQ=255) gcgcATCATGCAGTTTGGCGTTTGTCATCAGAGCCACCCACGTCCGCAGACGTGGTTGCTATTCAGATCACGTCGATTTAAGCGACTGACGGGTAAATCCAGCTGAGGCGGAAGGGCATACTGTCGCTATAGCCGCGcgacga > 2:998891/1‑143 (MQ=255) gcgcATCAGGCAGTTTGGCGTTTGTCATCAGCGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCCGCGACTGACGGGTAAGTCGAGCTGGGGCGGAAAAGCATACTGTAGATAGCGTAGAGcggcga > 2:829642/1‑143 (MQ=255) cgcATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGcgcagca > 2:596420/1‑138 (MQ=255) gcATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGaaa < 2:731026/143‑1 (MQ=255) gcATCAGGCAGTCTGGCGTTTGTCATCAGAGCCACCCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGaaa < 1:80860/143‑1 (MQ=255) ccaggcggCAGTTGGGCGTGTGTCGTCAGCGCCAACCAGGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAAGCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGaaa < 1:80859/137‑1 (MQ=255) ggCAGTTCGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAg < 1:884735/143‑1 (MQ=255) aGTCTGGCGTTTGTCATAAAATCCATCTGCGTCCGCAGACGTGGTTGCGATGCAGATAACGTCCATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGaaa < 2:657813/143‑1 (MQ=255) gTTTGGCGTTTGTCATCAGAGGCGAGCAGGTCCGCAGACGTGGTTGCGATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGAAAg < 1:271787/143‑1 (MQ=255) tttGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGCTTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATAGTGTGGATATCATCGAGCGACGAAACACCAGAAAga > 1:686252/1‑142 (MQ=255) ggCTTTTGTTAGCCGAGCCAACCACGTCTGCGGACGTTGTTGTTCTTCTGTTTATGTAGATCTCTGTGTCTGACGGGTAAATCCAGCTGGGGCGGAACGGCATCCTGTCGTTATCGTCGAGCGACGAAACACCAGAAAGCAcc < 2:258964/143‑1 (MQ=255) gTTTGTCATCAGAGCCAACCACGTCAGCAGACGTGGGTGCTATTCAGATAAAGTCGACTTCAGCGACTGACGGGTAAATCCAGCTGGAGCGGAAAGGCATACTGTCGGTATCGACGAGCGACGAAACACCAGAAAGCGCCaca > 2:646084/1‑141 (MQ=255) gTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGAACGCACCAGAATCg > 2:675239/1‑143 (MQ=255) tcatcaGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGCCGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGGGCCACGAAACACCAGAAAGCACCAGACTcca > 2:863167/1‑141 (MQ=255) catcaGAGCCAGCCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGAAAGCGCCAGAATCGtc < 2:256779/143‑1 (MQ=255) agtgCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGAAAGCACCAGAATCGTCTCCa < 2:181984/140‑1 (MQ=255) agagCCAGCCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGAAAGCACCAGAATCGTCTCCa < 2:918458/143‑1 (MQ=255) agagCCAACCACGTCCGCAGACGTGGATGCTATTCAGTGGACTTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGAAAGCACCAGAATCGTCTCCa < 1:184891/143‑1 (MQ=255) ccAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAACGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGTCACCAACAGAACCGTCGCCAGAca > 1:168797/1‑142 (MQ=255) ccAACCACGTCCGCAGACGTGGTTGCTAGTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGACCGGCATACTGTCGATATCGTCGAGCGACGACACACAAGAACGCACCAGCATCGTCTCCAGccc > 2:876783/1‑143 (MQ=255) aaCCACGTCTGCGGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGAACGCACCAGAATCGTCTCCAGAcctg > 1:251778/1‑143 (MQ=255) aaCCACGTCTGCGGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGAAAGCACCAGAATCGTCTCCAGAcctg > 1:905687/1‑143 (MQ=255) aaCCACGTCTGCGGACGTGGTTGCTATTCAGATAACGTCGACTCCAGCGACTGACGGGTATATCCATCGGGGGCGCCAAGGAATCCCGCCGATATCGACGAGCGACGACCCACCAGCACGCACCACAATAGTccccccaaccc > 2:494240/1‑136 (MQ=255) aaCCACGTCCGCAGACGTGGATGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGCCGGAAAGGCATACTGTCGATATCGTCGCGCGACGACACACCCGAAAGCACCACAAACGTCGCGAGAccgg > 2:590859/1‑141 (MQ=255) cAGACGTGGTTGCTATTCAGATAACGTCGATCTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGAAAGCACCAGAATCGTCTCCAGACCTGCCTGGAAGCCg < 1:993708/143‑1 (MQ=255) | TTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGGTAAATCCAGCTGGGGCGGAAAGGCATACTGTCGATATCGTCGAGCGACGAAACACCAGAAAGCACCAGAATCGTCTCCAGACCTGCCTGGAAGCCG > NC_000913/699417‑699700 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |