New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	42 (0.970)	14 (0.370)	13/248	2.1	28.2%	coding (290/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	1209619 =	34 (0.890)					pseudogene (37/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment

TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTG  >  NC_000913/1207649‑1207930                                                                                                                                              |                                                                                                                                             tggtcgAGGCCTCCGGTGCCAGCCTGGGGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGACTACGTTTGATAATACCCAATTTGAGGGCTCTGTGCAAACGGCTCTCGAAAACCtt                                                                                                                                             <  1:152863/143‑1 (MQ=14) gggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGCCGGCACGATCAGTTACTTACCGCACTTCGCGCGCTTCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCtt                                                                                                                                             <  1:85143/142‑1 (MQ=255)   cacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttattgcttcattttcataaccgTTgg                                                                                                                                           <  1:722477‑M1/4‑1 (MQ=255)    acagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccattagcttgttatttcttcattttcataaacgTTGGt                                                                                                                                          <  2:476940‑M1/5‑1 (MQ=255)       gttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg                                                                                                                                       >  2:39989‑M1/136‑143 (MQ=255)        ttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccctctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg                                                                                                                                      >  2:37606‑M1/135‑143 (MQ=255)        tgcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcatacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg                                                                                                                                      >  2:740438‑M1/135‑143 (MQ=255)        ggcctgcGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                      <  2:235824/137‑1 (MQ=255)        ggCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATACCAAATCGGATGGCACTGTGCCAACGGCTCTCGAAACCCTTGGTTTgg                                                                                                                                      <  1:622813/143‑1 (MQ=255)         gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTggg                                                                                                                                     <  1:288587/143‑1 (MQ=255)            gcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgaga                                                                                                                                  <  1:315675‑M1/13‑1 (MQ=255)            gcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgaga                                                                                                                                  <  1:577213‑M1/13‑1 (MQ=255)            aacacagCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAACCGCAAGAAGCCGTTTGGCGATATCACATCGGATGGCGCTGTGCAAACGGCTCTCGCAAACCTTGAGTTGGcaga                                                                                                                                  >  2:139340/7‑143 (MQ=17)              gcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg                                                                                                                                >  1:616889‑M1/129‑143 (MQ=255)               ggTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAgg                                                                                                                               <  2:716221/143‑1 (MQ=255)                 ttacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatggcatttgcttgttatttattcattttcataaacgTTGGTTTGGGAGAAGGAg                                                                                                                             <  1:305005‑M1/18‑1 (MQ=255)                 tGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAg                                                                                                                             <  1:595301/143‑1 (MQ=255)                  tacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagctaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc                                                                                                                            >  1:471147‑M1/125‑143 (MQ=255)                  gCCAGCCTGGGGAGGGGGCGCCACGACCAGCTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTCTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc                                                                                                                            <  2:653575/143‑1 (MQ=17)                       ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                       >  1:609357/1‑143 (MQ=255)                          agatctgtgttctggtcatttgtagatgcgcgaacgtccctaatatgcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa                                                                                                                    >  1:146551‑M1/117‑143 (MQ=255)                            ggaAGAGGCGGCACGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                  <  1:646131/142‑1 (MQ=255)                            agaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                  <  1:465665/143‑1 (MQ=255)                                          taCCAGTTACTTACCGCAACTCGCGCGCTGCTGTTACGCCGCAAGAATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                    <  1:451476/142‑1 (MQ=255)                                          gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                    <  2:609357/143‑1 (MQ=255)                                                 tacttacCGCACTTCGCGCGCTGCTGTTCAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa                                                                                             <  2:90038/143‑1 (MQ=255)                                                     tcccGCACCCCGCCCGCCTCTGTTAAGCCGCAACAACCCGCTTGCCCATATCCACTCGTATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa                                                                                         <  1:54219/141‑1 (MQ=21)                                                             ttagccaataagcatgttaaatccccttggtaaaatcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc                                                                                 >  2:122198‑M1/82‑143 (MQ=255)                                                             ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc                                                                                 >  1:363926/1‑143 (MQ=255)                                                             ttCGAGCGCTGCTGTTAAGCAGCAAGCATCCGTTTGCTGATACCCAATCTGATGGCCTCGTCCAAACGGCTCTCGAAGACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGAAACGGCTACATTAGGACGCACCGGTTTc                                                                                 <  1:109837/143‑1 (MQ=255)                                                               agcgaataagcctgttaaattcccctggtaaaaggaggaatgatgccatttgcttgttatttcttcattttcatatacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                               >  2:387281‑M1/80‑143 (MQ=255)                                                                 cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACATTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGAAACGGCTACATTAGGACGGCCCGGTTTCATAg                                                                             >  2:336573/1‑143 (MQ=25)                                                                  gcgcTGCTGGTGACCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc                                                                            <  2:587026/143‑1 (MQ=255)                                                                      tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAAACTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGAACCGGTTTCATAGCgata                                                                        >  2:183862/1‑143 (MQ=255)                                                                       gctgTCAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAc                                                                       <  1:389136/143‑1 (MQ=255)                                                                           ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTCTCACAGCTATACCGGt                                                                   >  2:786288/1‑143 (MQ=255)                                                                                 cGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTCCACACGGCTCTCGAACACCTTAGTTTTGGAGAAGGAGCAAAACTCAATGCAGCAAAGGCTACATTAGGACGCACCGACTTCATAGCTATACCGGttccgcg                                                             >  2:344476/1‑138 (MQ=25)                                                                                    aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTTATAGCTATACCGGTTATGAGtgg                                                          >  1:364005/1‑143 (MQ=255)                                                                                     cgAATCCCATGGGCGAGACCAAATGGGAGGCGACTGGGCAAACGGCTCCCGGAAACTCTGGTTTGGGAGAAGGAGCAAAACTTAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                         <  1:177420/142‑1 (MQ=255)                                                                                      gAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACGGCTACATTAGGACGCCCCGGCTTCATAGCTATACCCGCTATGCTtgacg                                                        >  2:496701/1‑140 (MQ=25)                                                                                             tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                 <  2:657782/143‑1 (MQ=255)                                                                                             tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                 <  1:95655/143‑1 (MQ=255)                                                                                             tgtGGCGATATCAAGTGGGATGGCGCTGGGCAAACGGCTCGCGAGAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                 <  2:181638/141‑1 (MQ=255)                                                                                             tgtGGCGATATCAAATGGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                 <  2:335948/141‑1 (MQ=255)                                                                                             aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                 >  1:524128‑M1/50‑143 (MQ=255)                                                                                              ttGGCGGTATCAAAGCGGATGGCACTGGGGAAACGGCTCGCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                <  1:596289/143‑1 (MQ=39)                                                                                              tagcaggattgatgccatttgctggttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGGCGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                >  2:149395‑M1/49‑143 (MQ=255)                                                                                                  cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAAGCTTGGTTTGGGAGAAGGGGCAAAACTACATGCAGCAACGGCTAGAGTGGGACGCACCGGTTTCATAGCTATACTGGTTGTGAACGGTGGTGGTGAGCAAt                                            >  1:14975/1‑143 (MQ=255)                                                                                                    gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                          >  1:654202‑M1/43‑143 (MQ=255)                                                                                                     tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGCAAACATTGGTTTGGGAGAAGGAGCAAAAGTCAATGCAGCAACGGCTGCATTAGGACGCACCGGGTTCATAGCTAGAGCGGCGGTGGTCGGCGGTATGGCGCAATCAg                                         >  2:7236/1‑143 (MQ=255)                                                                                                     tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAg                                         <  2:363926/143‑1 (MQ=255)                                                                                                          tgccatttgcttgttatttcttcattttcctaaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATc                                    >  1:371130‑M1/37‑143 (MQ=255)                                                                                                          aaTCGGAGGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATc                                    <  2:105140/143‑1 (MQ=255)                                                                                                           aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa                                                                                                     >  2:171638/1‑77 (MQ=255)                                                                                                           aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa                                                                                                     <  1:171638/77‑1 (MQ=255)                                                                                                                   cttgttatgtcttgattttcatagacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                           >  2:407719‑M1/28‑143 (MQ=255)                                                                                                                     aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGATATGATTGGGGGTATTGAGCAATCAGTAATCATTCAGTgggg                         >  1:5909/1‑143 (MQ=255)                                                                                                                             cttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAGTGAGCAATCAGTAATCATTCAGCGGGGGTGGAATg                 <  2:707577‑M1/126‑1 (MQ=255)                                                                                                                                  tcttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATAATTCAGTGGGGGTGGAATGCCGCa            <  1:663340‑M1/131‑1 (MQ=255)                                                                                                                                     tcGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGACCGCCCCaaga         <  2:533500/143‑3 (MQ=255)                                                                                                                                       ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc       <  1:229671‑M1/136‑1 (MQ=255)                                                                                                                                         gcaCCTTGGTTTGGGAGAAGGAGCCAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt     <  2:429141/141‑1 (MQ=255)                                                                                                                                         actccTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt     <  1:338704/140‑1 (MQ=255)                                                                                                                                            cgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAACAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTg  <  1:387064‑M1/141‑1 (MQ=255)                                                                                                                                              |                                                                                                                                             TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTG  >  NC_000913/1207649‑1207930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.