Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 4,114,431 | G→A | N14N (AAC→AAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,114,431 | 0 | G | A | 98.2% | 148.5 / NA | 55 | N14N (AAC→AAT) | fpr | flavodoxin/ferredoxin‑NADP(+) reductase |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (24/29); minor base C (0/1); total (25/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAA > NC_000913/4114291‑4114564 | ggATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAGACGGAAGCACGGAGGCGTGAACGGTGAGACTCAACAGGGCGTCGGTCCAAtt > 1:487046/1‑143 (MQ=255) aTCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCa > 2:333827/1‑143 (MQ=255) aTCGGGCGAGTTTACATAGGAGTAGGCGCGCGGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCa < 1:138323/143‑1 (MQ=255) gAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCAAGGGGGCGGGAACGGTGAGACTAAACAGGGCGTCGGTCCATGTCGGCACTTTAGt > 2:648319/1‑143 (MQ=255) ggttACAGTGGAGTAGGCGCGGTGGACGCGTTGGCCGGCGACTTCAAGGGCAAGCTGGGTAAAGTGCCCGGGGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGGCTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGa < 2:709040/141‑1 (MQ=255) aTAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGc < 1:788028/143‑1 (MQ=255) aTAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATATCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGc > 1:516277/1‑143 (MQ=255) aTAGGAGGAGGCGCCCTGGACGCGTTCGCCGTCGCTTTCAAGGCTAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGc < 2:94853/143‑1 (MQ=255) aGGAGTAGGCGCGCGGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCCATTCTGCACTTTAGTGACTTTGCCt < 2:192180/143‑1 (MQ=255) gAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGGACTTTGGTGACTTTGCCTGt > 1:696162/1‑143 (MQ=255) tAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACCGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTAc > 1:204111/1‑143 (MQ=255) gcgcgcTGGACGCGTTTGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCa > 2:798086/1‑143 (MQ=255) cgcTGGACGCGTGCGCCGTCGATTTCAAGGCCAGGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATc < 2:206137/143‑1 (MQ=255) cTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACTCAATAAg > 1:491460/1‑143 (MQ=255) atgcgTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATGCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCAt < 2:21166/141‑1 (MQ=255) aCGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCGAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCAt > 2:554766/1‑143 (MQ=255) ttCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATGAGCAAtctagt > 2:40900/1‑138 (MQ=255) ccGCCGTCGATTGCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTAGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGttttt < 1:11957/142‑1 (MQ=255) cGCCGTCGACTTCAAGGCCCAGCCTGGTAAATTGCCCGGCGGTAAGCGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGCGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTtc < 1:554339/143‑1 (MQ=255) cGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTcc < 1:57518/143‑1 (MQ=255) ggcGATTTCACGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCt < 1:235759/141‑1 (MQ=255) aTTTCAAGGACAAGCTTGGTAAATTGCCAGGCGGTAAACGGAAGCACGGGAGCGTGAACGGTGAGACTAAACAGAGCGTCGGTACAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAAACACCCATGTTTCTCTCCttttg > 2:726328/1‑142 (MQ=255) ttCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTttg > 1:736000/1‑143 (MQ=255) aaGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTttgat‑t > 1:427206/1‑143 (MQ=255) aaGGCCAAGCTTAGTAAGTTGCTCGGCGGTAAACGGAAGCACGGTGGCGTGAACTGTGAGACTTAACAGGTCGTCGGTCCAATTCTGCACTTTAGTAACTATACCTGTTACCCAATCAGCCATGTTTTTCTCCTTTTttgat‑t < 2:96878/143‑1 (MQ=255) ggCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGGACGGTGAGACTAAACAGGGCGTCGGTCCCATTCTGCGCTGTAGTGACTTTGCCTGTTGCCCAATCAGCCATGTGTTTCTCCTGTTttgacgga > 1:70918/1‑139 (MQ=255) cAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCCCGTTAGTGCCTTTGCCTGTTACCCACTCAGCCATGTTTTTCTCCTGTTTTGCT‑TGACtt > 1:725119/1‑143 (MQ=255) aaGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGGT‑TGACTTg > 2:145243/1‑143 (MQ=255) cgtGGTAAACTGCCCCGCGGTAAACTGCAGCACGGGGGCGTGAACGGTGATACTAAACCGGCCGTCCGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGTCTTGCCt < 2:612994/141‑1 (MQ=255) gTAGATCGCGCGGCGGTAAACGGAAGGACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAAGTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGACATGTTTTTTGCCTGTTTTGAT‑TGACTTGCCTTATc < 2:487046/143‑1 (MQ=255) gTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGCT‑TGCCTTGCCTTATc > 1:48441/1‑143 (MQ=255) tAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTCGGGACTTTGCCTGTTACCCAGTCAGCCACGTTTTTCTCCTGTTTTGAT‑TGGCTTGCCTTATCt > 1:598813/1‑143 (MQ=255) tactGCCCGGCGGTCACCGCAAGCACTGGGGCGTGAACGGTGAGACTCAACAGGGCGTCGGTCCAATTCTGCACCCTAGTGACTTTGCCCGTTACCCAATCAGCCATGTCTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTc < 1:115213/140‑1 (MQ=255) ccGGCGGTAACCGGAAGCACGGGGGCGTGAACGGTGAGTCTAAACTGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTtctc < 2:305165/143‑1 (MQ=255) ccGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTttg < 2:751774/118‑1 (MQ=255) ccGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTttg > 1:751774/1‑118 (MQ=255) tggcggTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTcc < 1:381950/142‑1 (MQ=255) cggcggTACACGGAGGCACGGGGGCGTGAACGGTGGGACTGAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTcc < 2:584559/143‑1 (MQ=255) cggcggTAAACTGAAGCACGGGCGCGTGAACGGGGAGACTAGACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTCACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTcc < 1:74251/143‑1 (MQ=255) cggTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTCCGaa < 1:432373/143‑1 (MQ=255) aaCGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATACTGCACTTTAGTGACTTTGCCTGTTACCAAATCAGCCATGTTTTTCTCGTGTTTTGAT‑TGACTTGCATTATCTTCGTTCTCCGAACaaaa > 1:262525/1‑143 (MQ=255) aCGGAAGCACTGGTGCGTGAACGGTGAGTCTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTATCCGAACaaaaa < 2:248744/143‑1 (MQ=255) cACGTGGGCGTGAACGGTGAGACTAATCAGGTCGTCTGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCa < 1:48307/143‑1 (MQ=255) cACGGGGGCGTGCACGGTGAGACTAAACAGGGCTTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCa < 1:147383/143‑1 (MQ=255) cgttaccGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGTCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGaa < 1:28189/137‑1 (MQ=255) gcaCGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGa < 1:720936/141‑1 (MQ=255) gAACGGTGGGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGa > 1:350951/1‑143 (MQ=255) gAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCCACT‑ATCAGATACTGCCTGCCTTATCTTCGTTCTCCGCACAAAAAAATTCCAGTCCCGAAGGa > 1:182091/1‑143 (MQ=255) aaCGGTGAGACTACACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTGCCCACTAAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATGTTCGTTCTCCGAACAACAAACTTCCAGTCCCGAAGGAc > 1:438362/1‑143 (MQ=255) agaCTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTGATCTTCGTTCTCCGAAAAAAAAAATTCCAGTCCCGAAGGACTGGAAgg < 1:45504/143‑1 (MQ=255) tAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCa > 1:465097/1‑143 (MQ=255) gggCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTc > 2:645298/1‑112 (MQ=255) gggCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTc < 1:645298/112‑1 (MQ=255) gggCGTCGCTCCAACTCTGCACTTTAGTTACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTGGAT‑TGACTTGCCTTATCTTCGTTCTACGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGat < 2:70918/143‑1 (MQ=255) gTCGGTCCACTTCGGCACTTTAGTGACTGTGCCTGTTACCCGATGTGCCCTTTGTATCTCCTGTTTTTTT‑GGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGatcaaa < 2:777438/143‑1 (MQ=255) | GGATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGAT‑TGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAA > NC_000913/4114291‑4114564 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |