mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 53,379 | 0 | T | C | 22.5% | 58.2 / 13.4 | 42 | E13G (GAG→GGG) | pdxA | 4‑hydroxythreonine‑4‑phosphate dehydrogenase |
| * | NC_000913 | 53,376 | 0 | G | A | 20.0% | 65.1 / 12.7 | 40 | P14L (CCC→CTC) | pdxA | 4‑hydroxythreonine‑4‑phosphate dehydrogenase |
| Marginal new junction evidence (lowest skew 10 of 62 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 570695 = | 1879 (43.570) | 33 (0.810) | 21/266 | 1.1 | 1.9% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 1669 (40.740) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568678 = | 1872 (43.410) | 21 (0.510) | 15/266 | 2.0 | 1.2% | intergenic (+31/‑17) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | 568704 = | 1683 (41.080) | coding (10/150 nt) | ylcJ | protein YlcJ | |||||
| * | ? | NC_000913 | = 572325 | 1627 (37.720) | 14 (0.350) | 11/260 | 2.8 | 0.94% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 1447 (36.130) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 570701 | 1776 (41.180) | 12 (0.290) | 10/266 | 3.2 | 0.71% | intergenic (+273/‑192) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570711 | 1669 (40.740) | intergenic (+283/‑182) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 570627 = | 1844 (42.760) | 10 (0.260) | 9/254 | 3.3 | 0.59% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 1680 (42.940) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 572352 | 1381 (32.020) | 11 (0.260) | 8/270 | 3.9 | 0.89% | intergenic (+101/‑16) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572369 | 1121 (26.960) | coding (2/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 315781 = | NA (NA) | 8 (0.190) | 8/270 | 3.9 | NA | noncoding (553/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315875 = | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 4171607 | 18 (0.420) | 7 (0.170) | 7/268 | 4.3 | 28.9% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 3946688 | 57 (1.320) | 7 (0.170) | 7/268 | 4.3 | 11.4% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4171601 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 7 (0.170) | 7/268 | 4.3 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA | |||||