BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	2491 (55.190)	255/262	NT	98.4%	noncoding (1/1258 nt)	IS3	repeat region
*	?	NC_000913	= 572471	40 (0.880)	2491 (55.190)	255/262	NT	98.4%	coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

Only 100 of 2830 total aligned reads displayed.

GAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGAAACGCAGTCTTTCCCAGAATGCAC  >  NC_000913/572329‑572613

gagcaccTCCCGTGCCTTCCGCGCGAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAc                                                                                                                                                <  1:406183/137‑1 (MQ=255)

 aacaacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACt                                                                                                                                               <  1:524134‑M2/143‑2 (MQ=255)

   ctccTCCTGTGACTTCTGCTCCACACGGGGACGTTTACGCGCACATACAATCCAAGCTCTCTTCTCCCTTCACAGATGCATAAATGCACCTTCAATTCTTTGCATCTAGCGTTTGACCTCTGTGGAGGGGAAGCGTGAActga                                                                                                                                             <  2:257668/140‑4 (MQ=255)

   caacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACGGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGGCCTCTGCGGAGGGGAAGCGTGGACtga                                                                                                                                             <  1:510416‑M2/143‑4 (MQ=255)

    tcctcCGGTGGCTTCTGCGCTACACGGGGCCGTTTATGCGCACATACAATCCACACGCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                            >  2:576164‑M2/3‑139 (MQ=255)

    ctctcCGGTGACTTCTGCGCTAATCGGGGACGTTTATGCGCACATACAATCCAATCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                            >  2:519365‑M2/3‑139 (MQ=255)

    aacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                            >  1:54735‑M2/1‑139 (MQ=255)

    aacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAACCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                            >  1:492769‑M2/1‑139 (MQ=255)

    aacTCCGGTGACTTCTGCGCTAAACGGGGACGGTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgat                                                                                                                                            >  1:563649‑M2/1‑139 (MQ=255)

        ccGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatctta                                                                                                                                        >  1:295113‑M2/1‑135 (MQ=255)

         cGGTGACTTCTGCGCTAAACGGGGACGATTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACATCTGCGGAGGGGAAGCGCGAACtgatcatac                                                                                                                                       <  2:294612‑M2/143‑10 (MQ=255)

             gACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccag                                                                                                                                   >  1:242137‑M2/1‑130 (MQ=255)

             gACTGCTGCGCTAAACGGGGACGCTTATGCGCACATACAAGCCAAACTCTCTCCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccag                                                                                                                                   >  1:47842‑M2/1‑130 (MQ=255)

                ttCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATTTAGCAGTTGACCTCTGCGGAGGGCAAGCGTGAACtgatcttacccagcaa                                                                                                                                <  1:846704‑M2/143‑17 (MQ=255)

                  cTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaata                                                                                                                              >  1:339356‑M2/1‑125 (MQ=255)

                   tGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatag                                                                                                                             <  1:699882‑M2/143‑20 (MQ=255)

                     cgcTAGACGGGGACGTTGATGCGCACATACAATCCAACCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtg                                                                                                                           >  2:873048‑M2/1‑122 (MQ=255)

                     cgcTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACCGATGCCGAAATGCACCTGCAACTCTTTGCATCTAGCGTTTGACCACTGCGGAGGGGAACCGTGAACtgatcttacccagcaatagtg                                                                                                                           <  2:671539‑M2/143‑22 (MQ=255)

                     cgcTAAACGGGGACGTTTATGCGCACATACAAGCCAAACTCTCTTCTCCCTTCACGGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtg                                                                                                                           >  1:9550‑M2/1‑122 (MQ=255)

                        tAAACGGGCACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCACCTAGCGAATGACCTCTGCGGCGGGGAAGCGTGAACtgatgttacccagcaatagcgggc                                                                                                                        <  2:507128‑M2/143‑25 (MQ=255)

                            cgtggacgTTTATGCGCACATACAATCCAAACTCTCTGCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgc                                                                                                                    <  1:777971‑M1/140‑29 (MQ=255)

                            cGGAGAGGTCTACGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgc                                                                                                                    >  1:791225‑M2/1‑115 (MQ=255)

                             ggggACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACATATGTTTTAATGTATCTGCTATTTTTTGCATCTAGCGTGTGACCTCGGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcg                                                                                                                   >  1:323524‑M2/1‑114 (MQ=255)

                                 aCGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggcta                                                                                                               <  1:595180‑M2/143‑34 (MQ=255)

                                  cGTTGATGCGCACAGACAATCCAAACTCTCTGCTCCCTGCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaa                                                                                                              >  1:609984‑M2/1‑109 (MQ=255)

                                    tttATGCGCACATACACTCCAACCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagt                                                                                                            >  1:441043‑M2/1‑107 (MQ=255)

                                      tATGCGTGCATACAGTCCAGTCTCTCTGCTCCCTTCACAGATGCAGAAATGCGCCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtga                                                                                                          >  2:385896‑M2/1‑105 (MQ=255)

                                      tATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAACCGTTTAAGCTATTCTGTTCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtga                                                                                                          >  1:651058‑M2/1‑105 (MQ=255)

                                      tATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtga                                                                                                          >  1:760983‑M2/1‑105 (MQ=255)

                                        tGCGCACATACCATCCAGCCTCTTTTCTCCCTTCACAGATGCAGAAACTCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagt                                                                                                        >  2:721055‑M2/1‑103 (MQ=255)

                                        tGCGCACATACAATCCAATCTCTCTTCTCCCTGCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCa                                                                                                        <  1:185424/143‑1 (MQ=255)

                                        tGCGCACATACAATCCAACCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagt                                                                                                        >  2:656935‑M2/1‑103 (MQ=255)

                                        tGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGGTTGACCTCTGGGGAGGGGAAGCGTGAACtaatcttgccccgcactagtggacacgcggctcagtgcgt                                                                                                        <  1:860036‑M2/143‑41 (MQ=255)

                                          cgtACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                                                                                                      >  1:211765‑M2/1‑101 (MQ=255)

                                                tACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctc                                                                                                >  1:53684‑M2/1‑95 (MQ=255)

                                                tACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactcgc                                                                                                <  2:609146‑M2/143‑49 (MQ=255)

                                                tACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTCTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgaggaaactctc                                                                                                <  2:85769‑M2/143‑49 (MQ=255)

                                                     tCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca                                                                                           <  1:354814‑M2/143‑54 (MQ=255)

                                                        aaaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCCTCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgacgaaactctcagtcagcg                                                                                        <  2:271970‑M2/143‑57 (MQ=255)

                                                        aaaCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtagactctcagtcagag                                                                                        <  1:427116‑M2/143‑57 (MQ=255)

                                                        aaaCTCTCTCCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag                                                                                        >  1:229838‑M2/1‑87 (MQ=255)

                                                        aaaCCCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag                                                                                        >  2:118005‑M2/1‑87 (MQ=255)

                                                          tctctcttCTTCCTTCACCGATGCCGAAATGCACCTGCAATGCTTTGCAGCTAGCGTTTGATCGCTGCGGAGGGGAAGCGTGAACtgagcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt                                                                                      >  2:148766‑M2/2‑85 (MQ=255)

                                                          aCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcgtacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt                                                                                      >  1:45435‑M2/1‑85 (MQ=255)

                                                               cttctCCCTTCACAGATGCGGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc                                                                                 >  2:404571‑M2/1‑80 (MQ=255)

                                                                ttctCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca                                                                                >  1:466404‑M2/1‑79 (MQ=255)

                                                                  ctcCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca                                                                              <  1:669500‑M2/143‑67 (MQ=255)

                                                                   tcCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACATCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaaaagtggacacgcggctaagtgagaaaactcccagtaaggggtgacccccat                                                                             <  2:888787‑M2/143‑68 (MQ=255)

                                                                       ttAACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGCAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaggaca                                                                         <  2:20808‑M2/143‑72 (MQ=255)

                                                                         cacaGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaa                                                                       >  1:68548‑M2/1‑70 (MQ=255)

                                                                          acaGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacacagctaagtgagtaaactctcagtcagaggtgactcacaagacaaaa                                                                      <  1:583257‑M2/143‑75 (MQ=255)

                                                                           caGATGCAGAAATGCACCTGCAATTCTTGGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaa                                                                     >  1:368971‑M2/1‑68 (MQ=255)

                                                                            aGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaac                                                                    <  2:368540‑M2/143‑77 (MQ=255)

                                                                            aGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaac                                                                    >  2:819928‑M2/1‑67 (MQ=255)

                                                                             gATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaaca                                                                   >  1:3901‑M2/1‑66 (MQ=255)

                                                                               tGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagt                                                                 >  1:831440‑M2/1‑64 (MQ=255)

                                                                               tGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagt                                                                 >  1:197475‑M2/1‑64 (MQ=255)

                                                                                gCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagta                                                                >  1:886670‑M2/1‑63 (MQ=255)

                                                                                 cAGGAATGCACCTGGAATTGTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaataggggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtat                                                               >  2:837469‑M2/1‑62 (MQ=255)

                                                                                 cAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtat                                                               <  2:70266‑M2/143‑82 (MQ=255)

                                                                                  aGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                                                              <  2:738914‑M2/143‑83 (MQ=255)

                                                                                  aGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatc                                                              <  2:641141‑M2/143‑83 (MQ=255)

                                                                                         cACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagt                                                       >  1:573660‑M2/1‑54 (MQ=255)

                                                                                            cTGCGATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaa                                                    >  2:246428‑M2/1‑51 (MQ=255)

                                                                                            cTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgacccacctgacaaaaacagtctcaaccagtaaa                                                    <  1:284584‑M2/143‑93 (MQ=255)

                                                                                             tGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaa                                                   >  1:808894‑M2/1‑50 (MQ=255)

                                                                                             tGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGACAGCGGGAACtgatcttacccagcaatagtggacacgcggcaaagtgagtaaactctcagtcagaggggactcacatgacaaaaacagtatcaaccagtaaaa                                                   <  2:489620‑M2/143‑94 (MQ=255)

                                                                                             tGCAATTCTTTCCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcaattagaggtgactcacataacaaaaacagtatcaaccagcaaaa                                                   <  2:771879‑M2/143‑94 (MQ=255)

                                                                                              gCAGTGCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacacagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaagaa                                                  <  2:443482‑M2/143‑95 (MQ=255)

                                                                                               cAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatcgtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaa                                                 <  1:133284‑M2/143‑96 (MQ=255)

                                                                                               cAAGTCTTTGCATCGAGCGCTTGACCGCAGCGGAGGGGAAGCGGGAACtgatcttacccagcaatagcggacacgcggcgaagtgagtaaactcgcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaa                                                 >  2:424737‑M2/1‑48 (MQ=255)

                                                                                                  ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccaggaaaaaaccc                                              <  1:270392‑M2/143‑99 (MQ=255)

                                                                                                  ttCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccaccaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccggtaaaaacccc                                              <  2:131162‑M2/143‑99 (MQ=255)

                                                                                                  tgcgtggcatctaTCGTTTGACCGGTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccc                                              >  2:805173‑M2/7‑45 (MQ=255)

                                                                                                     tttGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctccgtcagaggtgactcacatgacgaaaacagtatcaaccagtaaaaaaccccgt                                           <  1:746985‑M2/143‑102 (MQ=255)

                                                                                                     tttGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgt                                           <  2:169909‑M2/143‑102 (MQ=255)

                                                                                                        gCATCTAGCGTTTGACCGCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaa                                        >  1:625118‑M2/1‑39 (MQ=255)

                                                                                                         cATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggagactcacatgacaaaaacaggatgaacaagaaaacaaccccgtacca                                       <  2:472691‑M2/143‑106 (MQ=255)

                                                                                                              aGCATTTGACCTCTGCGGAGGGGAAGCGTGAACtgatcatacccagcaatagtggacacgcggctaactgaataaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcat                                  >  2:59598‑M2/1‑33 (MQ=255)

                                                                                                                  tttGACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtaccaagcagtaaaaaaccccgtaaacagcattcgc                              >  2:543193‑M2/1‑29 (MQ=255)

                                                                                                                  gttgACCTCTGCGGAGGGGAAGCGGGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgc                              >  2:459033‑M2/2‑29 (MQ=255)

                                                                                                                     gACCTCTGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtcaacagcattcgcctg                           <  1:729134‑M2/143‑118 (MQ=255)

                                                                                                                        ctctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaat                        <  1:257286‑M2/143‑121 (MQ=255)

                                                                                                                        ctctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaat                        <  2:231776‑M2/143‑121 (MQ=255)

                                                                                                                         tctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatt                       <  1:870570‑M2/143‑122 (MQ=255)

                                                                                                                         tctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggcgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaccagcattcgccagaata                       <  2:186840‑M2/143‑122 (MQ=255)

                                                                                                                          ctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctacgtgagtagactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtgaaaaaccccgtaaacaccattccgctaaattt                      <  2:329780‑M2/143‑123 (MQ=255)

                                                                                                                          ctGCGGAGGGGAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatgt                      <  1:716322‑M2/143‑123 (MQ=255)

                                                                                                                                cggggaAGCGTGAACtgatcttaccccgcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacctgacaaaaacagtatcaaccaggaaaaaaccccgtaaacagcattcgcctgaatttcgcagt                >  2:791679‑M2/2‑15 (MQ=255)

                                                                                                                                  gggAAGCGTGAACggaccttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaccacacaaacaaccggtatagagccccgtaaacagcattcgcctgaatttcgcagtga              >  1:169579‑M2/1‑13 (MQ=255)

                                                                                                                                   ggAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaa             >  2:756329‑M2/1‑12 (MQ=255)

                                                                                                                                    gAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaag            <  1:308505‑M2/143‑133 (MQ=255)

                                                                                                                                    gAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaag            <  1:100103‑M2/143‑133 (MQ=255)

                                                                                                                                    gAAGCGTGAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaag            <  1:82219‑M2/143‑133 (MQ=255)

                                                                                                                                    gAAGCGTGAACtgatcctacccagcaatagtggacacgcggctaagtgagcaaaccctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaag            >  1:151307‑M2/1‑11 (MQ=255)

                                                                                                                                        cGTGAACtgagatcacccagcaggcgtggacaggcggctaagtgactaaactctcagtcagaggtgactgacatgacaaaaaccgtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccct        >  2:35149‑M2/1‑7 (MQ=255)

                                                                                                                                         ttgAACtggtcttcccccgtaacagtggacacgcggctaagttagtaaactctcagtcagaggtgactcacatgacaaatacagtatcaaccagtaaaattccccgtaaacagcattcgcctgaatttcgcagtgaagccctg       >  2:314015‑M2/2‑6 (MQ=255)

                                                                                                                                         gTGAACCCCTCACGAGACGGCATCAAACTACATGGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGAAACGCAGTCTTTCCCAGaa       <  2:561997/143‑1 (MQ=255)

                                                                                                                                           gAACcgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatgacaaaaacagtatcaaccagtaaaaaaccccgtaaacagcattcgcctgaatttcgcagtgaagccctgaa     >  1:114859‑M2/1‑4 (MQ=255)

                                                                                                                                              ctgatcttacccagcaatagtggacacgcggctaagcgagtaaactctcagtcagaggtgactcacctgacaaaaacagtatcaaccagtaaaaaaccccgtaaaccgcatccgcacaactttcgcagtaaagccctgcagct  <  2:687031‑M2/143‑143 (MQ=255)

GAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATCGCGGCAACTTCACCGCTATCGGTCGGCAGATCCAGCCTTATCTGGAGGAGGGCAAATGCTTTCGCATGGTGCTTAAACCGTGGCGTGAGAAACGCAGTCTTTCCCAGAATGCAC  >  NC_000913/572329‑572613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.