| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 4 (0.090) | 22 (0.550) | 21/232 | NT | 75.2% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 11 (0.280) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
ATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAC > NC_000913/1209461‑1209739 | aTCAGTCAATTTATTTGTCGGCTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:592856‑M2/1‑142 (MQ=255) aaTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcc > 1:48541‑M2/1‑135 (MQ=255) atccggcttcgccGGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtttt > 2:472165‑M2/7‑121 (MQ=255) aTAACCCTTTGCCAGTCCCGGGTATTCTGCAGCAGAAAAGGCGGCACCATTGCATTCCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑CGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc > 1:458895‑M2/1‑120 (MQ=255) aaGTCTTTTCTAGTTCCGGTTATTCTTCAGTAGAAAAAGCGTCACTATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGTTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcg > 2:280510‑M2/1‑119 (MQ=255) gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgag > 1:510757‑M2/1‑117 (MQ=255) tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc < 2:648270‑M2/143‑30 (MQ=255) ttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:757318‑M2/143‑31 (MQ=255) ccGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCGAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaca > 2:269692‑M2/1‑104 (MQ=255) ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtg < 1:671416‑M2/143‑43 (MQ=255) tATTCTTCAGCAGAAAAAGCGGCACCATTACATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcc < 1:168874‑M2/143‑45 (MQ=255) tcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATgg < 1:786129/143‑1 (MQ=255) agAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 1:816831/1‑143 (MQ=255) cgccACTGCATTGCGGCGAGCCGGTTGGCGGAGTGGCCGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt < 2:202535/141‑1 (MQ=255) cACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaac < 2:558631‑M2/143‑67 (MQ=255) cACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaac < 2:119120‑M2/143‑67 (MQ=255) ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAGCCAACGTTTATGAATAGGACGAAATAACACGCAAATGGCATCGTTCCTTCTTTTTcctg > 1:32718/1‑141 (MQ=255) tGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCACCATTACAACTATTAACAgg > 1:792885/1‑143 (MQ=255) cctttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg < 1:304612/141‑1 (MQ=255) cATTTCAGCCAGCCGGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattctt > 2:693759‑M2/1‑69 (MQ=255) tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa > 2:605295/1‑143 (MQ=255) gccTGTGGGCGGAGGGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg < 1:225462/143‑1 (MQ=255) cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttgtcgagcgccgtttgcacagtgccatccgcttcgctatcgccaaacgggttctcgcggcgtaccagcagcgcgg < 2:341845‑M2/143‑95 (MQ=255) tGAAGGCCACGGAGCCGGGACACCGACCGGTAATTCAGAGccttctcccgaaccaaggttttcgacagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg > 2:334369‑M2/1‑40 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagaaccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcctaagagcagcccacgaagtacgg < 2:152445‑M2/143‑104 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaac < 1:345480‑M2/143‑112 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaaccgcagcgcgcgaagtgcggtaagtaactg < 1:80276‑M2/143‑114 (MQ=255) ggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa < 2:816831/143‑1 (MQ=255) gACACCAACAGGTAATGCAGAGcgttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgcc > 1:840766‑M2/1‑22 (MQ=255) acCAACAGGTACTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgctttgatatcgccaaacggattcttgcggctcaacagcagcgcgcgaagtgcgggaagtaactggtcgtgccgcc < 1:636126‑M2/143‑125 (MQ=255) ccAACAGGTAATGCAGAGCCTTCTCCAAAACCAAAGTTTGTGAAAATAAAGAAATAAAAAGCAAATGGCATCATTCCTGCCTTTACCGGGGGGGTTTTACTTACTTATTGGCTTTGTACGCGTATCAACAAATGACCAGAaca > 1:797252/1‑143 (MQ=255) cAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTCATGAAAATGAAGAAATAACAAGCAAATGGCACCATTCCTGCTTTTACCAGGGGGATATAACATGCCTACGGGCCACGCACGCGGAGCAAGAAAACGCCAGCACACAGa > 2:529577/1‑143 (MQ=255) aaTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgctcgatgtgcgggaagtaactggtcgtgccgccccttccccag < 2:308441‑M2/143‑135 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggct < 1:525421‑M2/143‑138 (MQ=255) gCAGAGccgcctcccaaaccaagtttttcgagagccgtttgcacagtgccatccgagttgatatcgccaaactgattcttccggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggct > 1:281976‑M2/1‑6 (MQ=255) | ATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAC > NC_000913/1209461‑1209739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |