New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3854888	43 (0.950)	5 (0.120)	5/246	NT	10.9%	coding (967/1185 nt)	emrD	multidrug efflux pump EmrD
	?	NC_000913	= 3854930	42 (0.990)					coding (1009/1185 nt)	emrD	multidrug efflux pump EmrD

ATCCCCGACTGGTTTGGCGTGATGAATGTCTGGACGCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGG  >  NC_000913/3854789‑3855071                                                                                                                                              |                                                                                                                                              aTCCCCGACTGGTTTGGCGTGATGAATGTCTGGACGCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGCCGCGCTGGAGCCGTTCCCCTCACTGGCCGCCCCGGCCGGCGc                                                                                                                                              <  2:130954‑M2/143‑2 (MQ=255)         cTGGTTTGGCGTGATGAATGTCTGGACGCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGCCCAGCGGCGAGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGAGGGGGcgcgggtcg                                                                                                                                      <  1:119297‑M2/143‑10 (MQ=255)          tGGTTTGGCGTGATGAATGTCTGGACGCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTcgg                                                                                                                                     >  1:281667/1‑143 (MQ=255)            gTTGGGCGTGGCGACTGTCTGGAGGCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTcggcg                                                                                                                                   <  2:34284/143‑1 (MQ=255)             tttGGCGTGATGAATGTCTGGACGCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGCCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGGTGGTcggcgg                                                                                                                                  >  2:103207/1‑143 (MQ=255)               tGGCGTGATGAATGTCTGGACGCTGCTCGTTCGCGCCGCGCTGTTCTTTTTCGGTGCGGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTc                                                                                                                                >  1:562594/1‑143 (MQ=255)                     gatgaATGTCTGGACGCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCaaa                                                                                                                          >  1:590850/1‑143 (MQ=255)                      atgaATGTCTGGACGCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCaaaa                                                                                                                         <  1:9369/143‑1 (MQ=255)                         aaTGGCGGGACGCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACAt                                                                                                                      <  1:895765/143‑1 (MQ=255)                              cTGGACGCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCGGGCGCGCTGGGCGGCGGTCTGCAAAACATTGGtt                                                                                                                 >  1:820916/1‑143 (MQ=255)                                 gtcGCTGCTCGTGCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTGTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCg                                                                                                              <  2:88611/141‑1 (MQ=255)                                      tgctCGTTCCCGCCGCGCGGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTg                                                                                                         <  1:581583/143‑1 (MQ=255)                                             tCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGCTGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGt                                                                                                  <  2:22389/143‑1 (MQ=255)                                               ccgccgCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCg                                                                                                <  1:862416/143‑1 (MQ=255)                                                cgccgcGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGCCGCGCTGGTCGCCGGTCTGCAAAACATTGCTTCCGGCGTGctcgcctcgc                                                                                               >  2:677304/1‑143 (MQ=255)                                                 gccgcGCTGTTCTTGTTCGGGGCCGGGATGCTCTGTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCGGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGct                                                                                              <  2:457911/143‑1 (MQ=255)                                                  ccgcGCTGTTCTTTTTCGGTGCCGGGCTGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGGTGGTCGGCGGTCTGCAAAACCTTGGTTCCGGCGTGCTGGCGTCGctc                                                                                             >  1:154833/1‑143 (MQ=255)                                                         gtgcgtttcCGTTGCCGGGATGCTGTTTCTGCTGGCGACCAGCGGCGCGGTGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGa                                                                                      <  2:479098/138‑1 (MQ=255)                                                         gtcccttttCGGCGCCGGGATCCTGTTCCCGCCGGCGCCCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGCCGGCCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGa                                                                                      <  1:4085/138‑1 (MQ=255)                                                          ttCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGGCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGAt                                                                                     >  2:67204/1‑143 (MQ=255)                                                          ttCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTGCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGAt                                                                                     <  1:736828/143‑1 (MQ=255)                                                             tttttCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGtt                                                                                  >  1:504372/1‑143 (MQ=255)                                                                tgcGGTGCGGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGCGCCGTTTCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGcc                                                                               <  1:649409/141‑1 (MQ=255)                                                                   ggTGCAGGGAGGCTGTTGCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAACACATTGGTAGCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCa                                                                            <  1:613718/143‑1 (MQ=255)                                                                     tGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCaaa                                                                          >  1:75339/1‑143 (MQ=255)                                                                        cGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTGTCTGCGATGTTGCCCCAAACCg                                                                       >  2:158976/1‑143 (MQ=255)                                                                            aTGCGGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCa                                                                   <  2:598487/143‑1 (MQ=255)                                                                                tGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGcgctggtcggcagcggacacagcatcccggcaccgaaaaagaacagcgcggcgggaaccaccagcgccccgacattcatc                                                               <  2:877770‑M2/143‑81 (MQ=255)                                                                                      cGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCCCTCTGCGATGTTGCCGCCAACCGGTCCGGGCAGccgc                                                         >  2:351974/1‑141 (MQ=255)                                                                                       gCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTgg                                                        >  1:677412/1‑143 (MQ=255)                                                                                        ctggtcgccAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGAGGTTGCCGCAAACCGGTCAAGGCAGCCTggg                                                       >  2:86688/8‑143 (MQ=255)                                                                                         tGGCGACCAGCGGCGCGATGGAGCCGTTCGCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTGTGCAAAACAGTGGTTCCGGCGTGCTGGCGTCGGGCTCCGCGAGGTTGACGCAACCCGGTCCGGGCGGCCttcgg                                                      >  2:174176/1‑139 (MQ=255)                                                                                           gCGACCGGCGGTGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAATACATTGGTTCCGGCGTGCTGGCGTCGCTCGCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGgtt                                                    <  1:73540/143‑1 (MQ=255)                                                                                           gCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCAGGTCGGCGGTCTGCCGAGCCTCGGTTGCGGCGTGCTGGTGGCGTTCTCCGCGCTGTGGCCGGCAACTGGTCCGGG‑AGCCTgggggtc                                                   >  2:55665/1‑140 (MQ=255)                                                                                             gACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCACAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCCGCGATGTTGCCGCAAACCGGTCCGGGCCGCCTGGGgtcgc                                                  >  1:168885/1‑140 (MQ=255)                                                                                              aCCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGcgctggtcgccagcggaaacagcatcccggcaccgaaaaagaacagcgcggcgggaacgagcagcgtccagacattcatcacgccaaaccagtc                                                 <  1:57370‑M2/143‑95 (MQ=255)                                                                                               ccAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGcgctggtcgccagcggaaacagcatcccggcaccgaaaaagaacagcgcggcgggaacgagcggcgtgcagacattcatcagggcaaaccagtgg                                                <  1:48265‑M2/143‑96 (MQ=255)                                                                                                cAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGGGGGCCCGGCTGGCGCGCTGGTCGGCGGTCTGCAAACCATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCACACCGGTCAGGGCAGCCTGGGGGTGTtga                                               >  1:66924/1‑143 (MQ=255)                                                                                                cAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGACGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTtga                                               >  2:760222/1‑143 (MQ=255)                                                                                                             gAGCCGCTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCGGCCTGGGGTTGTTGATGCCCGTAATggg                                  >  2:347281/1‑143 (MQ=255)                                                                                                               gCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGTGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGAt                                >  1:364005/1‑143 (MQ=255)                                                                                                                ccGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCTGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGAtt                               <  1:753251/143‑1 (MQ=255)                                                                                                                 cGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGAttg                              <  1:711726/143‑1 (MQ=255)                                                                                                                   ttCCCCTTCCTGGCGGGCACGGCTGGCGCGCGGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGAttgtt                            <  1:832272/143‑1 (MQ=255)                                                                                                                     ccccTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGa                          <  1:739713/143‑1 (MQ=255)                                                                                                                             tGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGACGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCgtgctg                  >  1:747262/1‑143 (MQ=255)                                                                                                                             tGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGCCGCTCTCTGCGATGTTGCCGCACACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCgtgctg                  >  2:827898/1‑143 (MQ=255)                                                                                                                                 gggCACGGCTGGCGcgctggtcggcagcggaaacagcatcccggcaccgaaaaagaacagcgcggcgggaacgagcagcgtccagacattcatcacgccaaaccagtcggggatccacatcagcaagccagccagcaggcagc              >  1:877770‑M2/1‑14 (MQ=255)                                                                                                                                     aCGGCTGGCGcgctggtcgccagcggaaacagcatcccggcaccgaaaaagaacagcgcggcgggaacgagcagcgtccagacattcatcacgccaaaccagtcggggatccacatcagcaagccagccagcaggcagcagat          >  2:57370‑M2/1‑10 (MQ=255)                                                                                                                                       ggCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGc        <  2:281667/143‑1 (MQ=255)                                                                                                                                       ggCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGCGCAGCCTGGGGTTGTTGATGACCTTAATAGGATTGTTGATCGTGCTGTgctggctcc        >  2:536652/1‑141 (MQ=255)                                                                                                                                        gcgggCGCGCTGGGCGGCGGTCTGCAAAACATGGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGGCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGcc       <  1:134992/140‑1 (MQ=255)                                                                                                                                         cTGGCGCGCGGGTCGGCGCTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGTCCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCg      <  1:448334/143‑1 (MQ=255)                                                                                                                                            gcgcgcTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGCGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTTGCTGCCGCTg   >  2:181795/1‑143 (MQ=255)                                                                                                                                             cgcgcTGGTCGGCGGTCTGCTAAACACTGGCTCGGGCGTGCTGGCGTCGCTCTCGGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGAGTGTTGATCGTGCTGTGCTGGCTGCCGCTgg  <  2:229813/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              ATCCCCGACTGGTTTGGCGTGATGAATGTCTGGACGCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTGGCGGGCACGGCTGGCGCGCTGGTCGGCGGTCTGCAAAACATTGGTTCCGGCGTGCTGGCGTCGCTCTCTGCGATGTTGCCGCAAACCGGTCAGGGCAGCCTGGGGTTGTTGATGACCTTAATGGGATTGTTGATCGTGCTGTGCTGGCTGCCGCTGG  >  NC_000913/3854789‑3855071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.