| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4257736 = | 45 (0.990) | 3 (0.070) | 3/250 | NT | 6.4% | intergenic (+13/‑6) | lexA/dinF | DNA‑binding transcriptional repressor LexA/DNA damage‑inducible protein F |
| ? | NC_000913 | 4257762 = | 45 (1.050) | coding (21/1380 nt) | dinF | DNA damage‑inducible protein F | |||||
CGAGTTTAAACCAATTGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAATATCACCGTTCCGTTGCTGGGACTGGTCGATACGG > NC_000913/4257630‑4257895 | cGAGTTTAAACCAATTGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCAt < 2:569472/143‑1 (MQ=255)cGAGTTTAAACCAATTGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGCTTTTCAt > 2:601779/1‑143 (MQ=255) tttAAACCAATTGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCAtctct > 1:744270/1‑143 (MQ=255) tttAAACCAATTGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGCCGACTGACTTAAACAAATCACAAAAACCGCGATGACGCCTGGCGTCGCGGTTTGATTTTCAtatgt > 1:746162/1‑139 (MQ=255) tgaaaCCAATGGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCAtctctc < 2:697969/141‑1 (MQ=255) tggagaaagtcatgggtaaggcgagatgccagagtgctttatcagatgaagtgaggaatgccatgcagacaagcctgatgaagagagatgaaaaacaaCCCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTtc > 1:246984‑M1/99‑143 (MQ=255) aaCCAATTGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCGTGGCGTCGCGGTTTGTTTTTCATCTCGCTtc > 2:242839/1‑143 (MQ=255) aaCCAATTGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAAGCATGGGCGTCAGTCTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTtc < 1:650514/143‑1 (MQ=255) aCCAATTGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGTCTGGCTGTAACATATCTCTGAGGCCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTTTTTTCTCTtca > 1:558815/1‑143 (MQ=255) aCCAATTGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATAGCTCTGAGACCGCGATGCCGCGTGGCGTCGCGGTTTGTTTTTCAGCTCACTtcg > 2:283647/1‑142 (MQ=255) cAATTGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTtcatc > 2:564680/1‑143 (MQ=255) agaaaatcatgggtaacgcgagatgccagagtgctttatcagatgaagtgaggaatgccatgcagacaagcctgatgaagagagatgaaaaacaaACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTtcatc > 1:709278‑M1/96‑143 (MQ=255) ttGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAgg < 2:880187/143‑1 (MQ=255) tggtcgtcGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAgg < 1:304227/141‑1 (MQ=255) tCGTTGACCGTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCtt < 2:415448/143‑1 (MQ=255) cTTCGTCAGCCGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCAt < 1:513442/143‑1 (MQ=255) cTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTCTCATCTCTCTTCATCAGGCTTGTCTGCAt > 1:684482/1‑143 (MQ=255) cTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGGTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGGTTGCTTTTCATCTCGCTTCACCCGGCTTGTCTGCAt > 2:82589/1‑143 (MQ=255) tCGTCAGCAGAGCTGCAGGATGGACGGGCTGGCGGTTGGGGTTATGCGCAACGGGGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATgg < 2:317368/143‑1 (MQ=255) gcggcagcagAGCTTCACCGTGGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATgg < 2:690675/139‑1 (MQ=255) agcagAGCTTCACCATTGAAGGGCTGGCGGTTGGGGCTATTCGCAACGGCGACCGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCGTTc > 2:174064/1‑143 (MQ=255) gcagAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGCCTGCCTGTAGCATCTCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTCTGTTTGTCATCTCACTTCATCAGGCTTGTCTGCATGGCATTcc > 2:640823/1‑143 (MQ=255) agagCTTCACCAGTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTc < 1:742080/143‑1 (MQ=255) agCTTCACCAGTGGAGGGCTGGCGGTTGGGGTTATCCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCAc < 1:176496/143‑1 (MQ=255) ccgcATTGGAGGGGTGGCGGGTGGGGTTAGGCGCGACGGTGTCTGGCTGTAGCATCTCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTCCAt < 2:692474/140‑1 (MQ=255) cACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCCTGGCATGCTTCACTTCAt > 1:480699/1‑143 (MQ=255) cATTGAAGGGCTGGCGGGTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTg > 1:106993/1‑143 (MQ=255) ttGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCTTCTGAt > 1:269151/1‑143 (MQ=255) tGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCATGCTTGTCTGCATGGCATTCCTCACTTCATCTGATa > 1:844211/1‑143 (MQ=255) ggCTGGCGGTTGGGGTTATTCGCAACGACGACAGGCCATAACATAGCTCTGAGACCGCGATGGCGCCTGGCGTCGCGGGTTGTTATTCATCGCTCTTCATCACGCTTGTCTGCATGGCTGTCCTCACTTCATCTTATAAAGCa > 2:780190/1‑143 (MQ=255) gCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGATTGTCGGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTg > 1:555824/1‑143 (MQ=255) ggTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCg > 1:278557/1‑143 (MQ=255) cGCAACAGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTAcc > 1:484010/1‑143 (MQ=255) cAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTCCATCTGATAAAGCACTCTGGCATCCCGCCTTACCCa > 2:856580/1‑143 (MQ=255) gatgaagagagatgaaaaacaaaccgcgacgccaggcggcatcgcggtTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCGTTACCCATGATTTtct > 1:709278‑M2/49‑143 (MQ=255) cTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTtct > 1:777409/1‑143 (MQ=255) tGGCTGTAACATATCTCTGAGCCCGTGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCACGCTTGTCTGCATGGCATTCCTCACTTCATCTTATAACGCACTCTGGCATCTCGCCTTACCCATGATTTtctc < 2:760474/143‑1 (MQ=255) gaagagagatgaaaaacaaaccgcgacgccaggcggcatcgcgggTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGACTTTCTCCa > 1:246984‑M2/46‑143 (MQ=255) tGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAat > 1:784741/1‑143 (MQ=255) cATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAATATCAc > 1:240321/1‑143 (MQ=255) cATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGAACTTCTCCAgtagtac > 1:551480/1‑139 (MQ=255) cATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGATATTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCGTGATTTTCTCCAATATCAc > 1:151640/1‑143 (MQ=255) atatCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTTTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCCTGTTTTTCTCCAATCTCAcc > 1:740363/1‑143 (MQ=255) tatCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATCAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAATATCAccg > 1:355987/1‑143 (MQ=255) tctGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCAACCAGGCCTCGCGCTTTACCCATGATCGTCTCCAATACCAccgttcc > 1:74430/1‑143 (MQ=255) tctGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGGTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAATATCAccgttcc < 1:174924/143‑1 (MQ=255) ctGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCGTGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTCCCCATGATTTTCTCCAATATCAccgctccg > 1:247635/1‑143 (MQ=255) CCGCGATGCCGCCTGGCGTGGCGGTTTGTTTTTCATCTCCCTTCCTCGGGCTTGTCTGCATGGCATTCCTCACTTCACCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAATATCACCGTTCCGTTGCTg > 1:409102‑M1/1‑143 (MQ=255) CCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAATATCACCGTTCCGTTGCTg > 1:564680‑M1/1‑143 (MQ=255) cgcgacgccaggcggcatcgcggtTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAATATCACCGTTCCGTTGCTgg > 1:439104‑M2/25‑143 (MQ=255) cTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAATATCACCGTTCCGTTGCTGGGACTGGTCGAt < 1:871505/143‑1 (MQ=255) cTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCAATCATTTTCTCCAATATCACCGTTCCGTGGCTGTGACTAGTCgtt > 2:606496/1‑141 (MQ=255) cGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAATATCACCGTTCCGTTGCTGGGACTGGTCGATAcgg < 2:523292/143‑1 (MQ=255) cGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAATATCACCGTTCCGTTGCTGGGACTGGTCGATAcgg < 1:856943/143‑1 (MQ=255) cGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCAATCTGGCATCTCGCCTTACCCGTGATTTTCTCCGATATCACCGTTCCGTCGCTGGGCCTGGTCGATGcgc > 1:359586/1‑142 (MQ=255) | CGAGTTTAAACCAATTGTCGTTGACCTTCGTCAGCAGAGCTTCACCATTGAAGGGCTGGCGGTTGGGGTTATTCGCAACGGCGACTGGCTGTAACATATCTCTGAGACCGCGATGCCGCCTGGCGTCGCGGTTTGTTTTTCATCTCTCTTCATCAGGCTTGTCTGCATGGCATTCCTCACTTCATCTGATAAAGCACTCTGGCATCTCGCCTTACCCATGATTTTCTCCAATATCACCGTTCCGTTGCTGGGACTGGTCGATACGG > NC_000913/4257630‑4257895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |