| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,972,653 | A→T | 7.4% | intergenic (+16/+16) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase Tas/lysophospholipid transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,972,653 | 0 | A | T | 7.4% | 151.0 / 4.2 | 55 | intergenic (+16/+16) | tas/lplT | putative NADP(H)‑dependent aldo‑keto reductase Tas/lysophospholipid transporter |
| Reads supporting (aligned to +/- strand): ref base A (29/21); new base T (2/2); total (31/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.83e-01 | |||||||||||
CTGCTGGGCGCAACCACGATGGATCAGCTGAAAACTAACATCGAAAGTTTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATC > NC_000913/2972512‑2972792 | ctgctgGGCGCAACCACGATGGATCAGCTGAAAACTAACATCGAAAGTTTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAACGATGCATCAGGTTTATACTTATCCGGCACCATAAGAGTAACGCCGGCTaaa > 2:2227/1‑143 (MQ=255) tgctgGGCGCAACCACGATGGATTAGCTGAAAACTAACATCGAAAGTTGGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTaaaa < 1:428652/143‑1 (MQ=255) ctgGGCGCAACCACGATGGATCAGCTGAAAACTAACATCGAAAGTTTGCAGCTGGAGTTAGGCGAAGACGTATTCGCTGAAATTGAAGCGGTGCATCAGCGTTATACTTATCCGGCACCATAAGATTAACGCCGGTTTACAcc > 2:552554/1‑143 (MQ=255) tgGGCGCAACCACGATGGATCAGCTGAAAACTAACATCGAAAGTTTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAACACCg > 1:351845/1‑143 (MQ=255) tgGGCGCAACCACGATGGATCAGCTGAAAACTAACATCGAAAGTTTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTAGCCGGCACCATAAGATTAACGCCGGTTAAAACCg < 2:711330/143‑1 (MQ=255) ggcAACCACGATTGATCAGCTGAGAACTATCTTCTGTTTTTTTCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTTTAACCGGCGt < 2:865440/142‑1 (MQ=255) ggcAACCACGATGGATCAGCTGTGCACTAACATCGAAAGATTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTTTAACCGGCGt < 1:796150/142‑1 (MQ=255) gcAACCACGATGGATCAGCTGAAAACTAACATCGAAAGTTTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGtt > 1:634675/1‑143 (MQ=255) aCCACGATGGATCAGCTGAAAACTAACATCGAAAGTTTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTaaa < 1:358375/143‑1 (MQ=255) ccACGATGGATCAGCTGAGAACTAACAGCGAAAGCGGGCATCTGGAGGTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAat < 1:495398/143‑1 (MQ=255) gATGTATCAGCTGAAAACTAACATCGAAAGTTTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTa < 1:751343/143‑1 (MQ=255) tGGATCAGCTGAAAACTAACATCGAAAGTTTGCATCTGGAGTTAAGCGAAGATGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAAt < 1:853460/143‑1 (MQ=255) tCAGCTGAGATCTAACATCGAAAGTGTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGGGGGGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACg < 2:608230/143‑1 (MQ=255) cAGCTGAAAACTAACATCGAAAGGTTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACgg < 1:727819/143‑1 (MQ=255) aGCTGAAAACTAACATCGAAAGTTTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGgc < 1:485782/143‑1 (MQ=255) tGAAAACTAACATCGAAAGTTTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCt > 2:301622/1‑143 (MQ=255) cgaccATCGGAGGTTTGCATCTGGAGTGAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGa < 2:41335/139‑1 (MQ=255) tttGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGt < 1:200481/143‑1 (MQ=255) gCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTAt < 1:184616/143‑1 (MQ=255) tCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGc > 1:390661/1‑143 (MQ=255) aaGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCaaa < 1:299082/143‑1 (MQ=255) cGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAg < 1:186857/143‑1 (MQ=255) cGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCACACTTATTGCCACCGCAAACAg > 2:665222/1‑143 (MQ=255) cGAAGACGGATTAGCGGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAg < 1:383174/143‑1 (MQ=255) aCGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCAc > 1:76686/1‑143 (MQ=255) ttAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTACCGACCGTTAACACCGGCGTTAAATATTACTGATGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAg > 1:360140/1‑143 (MQ=255) tGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAACCAGCGCACCGACgccaat > 1:782218/1‑143 (MQ=255) gacaTTGAATCGGTGCATCAGGTTTATACTTATCCGGCACCATAATATTAACGCCTGTTTATTCCTGTGTTAAATATTAATGACGGCGCTGCCAGAGCCACGGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAgccaatg < 1:49183/140‑1 (MQ=255) gAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAgccaatg > 1:785027/1‑143 (MQ=255) aaaTTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGGTAAATCTTACTGACGGCGCCGCCAGATCCACCGCGCCGTTATCGCCCGCGCACACAGCGCCACGCAgccaacgc > 2:888992/1‑143 (MQ=255) aTTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAgccaatgcca < 2:443328/143‑1 (MQ=255) aTTCAAGCGGTGCATCAGGTTTATACTGATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAgccaatgcca < 2:883464/143‑1 (MQ=255) aaGCGGTGCATCAGGCTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACGGGCGTTAAATATTCATGACGGCGCTGCCAGAGCCACGGCGCCGTGACTGCGAGCGCAAACCGCGCACCGAAgccaatgccagagg > 2:264765/1‑139 (MQ=255) tCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCgg < 1:839579/143‑1 (MQ=255) tCAGGTTTATACTTATCCGGCACCATAAGACTAACGCCCGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCgg < 1:795210/143‑1 (MQ=255) cAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGCCGTCGCTAGATCCACAGCGCCGTTATTGCCAGCGCCATCAGCGCTCCGAAGCCACTGCCCATGGGCCCCAccctc > 1:801101/1‑140 (MQ=255) gTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAGCAGCGCACAGAAGCCAATGCCAATGGGCACGACCGGGATg > 2:428181/1‑143 (MQ=255) tataCTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCt > 1:53478/1‑143 (MQ=255) taCTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTAt < 2:412247/143‑1 (MQ=255) aCTTATCCGGCACCATAAGATTAACGCCGGTTAACCACGACCCTTATTAGTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGCGCACCACCGAGATGCCTATc > 2:399702/1‑143 (MQ=255) ttATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCACTGCCAATGGGCACGACCGGGCTGCCTATCAt > 1:784666/1‑143 (MQ=255) tCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTAc > 2:792492/1‑143 (MQ=255) tCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGACAATGGGCACGACCGGGATGCCTACCATTAc > 2:528526/1‑143 (MQ=255) tCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGACGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGCTGCCCATCACTAc > 2:790751/1‑143 (MQ=255) ggCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGc > 1:849151/1‑143 (MQ=255) cATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACGGGGGTGCCAATCATTACCGCCAGCg > 1:600877/1‑143 (MQ=255) tAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGCTGCCTATCATTACCGCCAGCGAg > 1:578214/1‑143 (MQ=255) aaGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGt > 1:427561/1‑143 (MQ=255) aTTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGTaaa > 1:213269/1‑143 (MQ=255) ttAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGTAAAt > 2:115384/1‑143 (MQ=255) aaCGCCGGTTTTAACAGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCACACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATGATTACCCCCAGCGAGTCAAtac > 2:753701/1‑141 (MQ=255) aCGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGGCGTTATTGCCAGCGCAAACAGCGCACGGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGTAAAGGcc > 1:292309/1‑143 (MQ=255) cGCCGGTTTTAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGccc > 2:590406/1‑143 (MQ=255) ccGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAACGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAg < 1:350279/143‑1 (MQ=255) cGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACGGCCAGCGAGTAAATGCCCAGc > 1:367693/1‑143 (MQ=255) ttACAACCGGCTTTAAATATTAATGACGTCGCTGTCAGATCCACAGCGTCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATc < 1:86402/143‑1 (MQ=255) ttAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGTCAATGCCCAGCATc > 1:86707/1‑143 (MQ=255) | CTGCTGGGCGCAACCACGATGGATCAGCTGAAAACTAACATCGAAAGTTTGCATCTGGAGTTAAGCGAAGACGTATTAGCTGAAATTGAAGCGGTGCATCAGGTTTATACTTATCCGGCACCATAAGATTAACGCCGGTTAAAACCGGCGTTAAATATTAATGACGGCGCTGCCAGATCCACAGCGCCGTTATTGCCAGCGCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATC > NC_000913/2972512‑2972792 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |