| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,114,431 | G→A | 100% | N14N (AAC→AAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,114,431 | 0 | G | A | 100.0% | 116.0 / ‑6.7 | 43 | N14N (AAC→AAT) | fpr | flavodoxin/ferredoxin‑NADP(+) reductase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (16/26); total (17/26) | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAATCAATC > NC_000913/4114292‑4114570 | gATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTc > 1:741983/1‑143 (MQ=255) aTCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCa < 2:676473/143‑1 (MQ=255) ggCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTGCAATTCTGCACttt > 1:773030/1‑143 (MQ=255) gTTTACATAGGAGTAGGCGCGCTGGACGCGTCCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCGAACTCTGCACTGTAGTGa > 2:97325/1‑143 (MQ=255) tACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTACATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGCACGGTGAGACTAAACAGGGCGTCGGTGCCGTTCTGCACATGAGTGAcgt > 1:885269/1‑141 (MQ=255) tAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTAc > 1:711372/1‑143 (MQ=255) cgcggTGGAGGCGTTCGCCGTCGCGTTTAAGGCCAAGCTTGGGAAATTGCCCGGCGGGAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACGGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCaa < 2:330933/143‑1 (MQ=255) gcTCGAAGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAAGTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGACCGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCa < 2:887774/143‑1 (MQ=255) actcgTTCGCTGTCGAGTTCAAGGCCAAGGTTTGGAATTTGCCCGGCGGTAAACGTAAGCCCGGGGGCGTGAACGGTGAGACTAAATATGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCAt < 2:250550/140‑1 (MQ=255) aCGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCAt > 1:439350/1‑143 (MQ=255) gtgcGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGATCGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGttt < 2:69600/140‑1 (MQ=255) tCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGttttt > 1:477973/1‑143 (MQ=255) gTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCTTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCt < 1:561983/143‑1 (MQ=255) gTCGATTACATGGCCAAGCTCGGTAAATTGCTTGTTGTTAAACGGAAGCACGGGGGCGTGAACGGTGAGACGAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCt < 1:282956/143‑1 (MQ=255) gTCGAGTTCAAGCCCAAGCTTGCGAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCt < 1:625580/143‑1 (MQ=255) gATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGtt > 1:569092/1‑143 (MQ=255) tcatCAAGTCTAATCTTGGGCAATGGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTACACCGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCCATCAGCCATGTTTTTCTCCTGttt < 1:645373/140‑1 (MQ=255) aTTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTGTCGTGACTTTGCCTGTTACGCGCTGGGCCATGTTTTTCTCGTGttt > 2:677506/1‑143 (MQ=255) tCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACCGGGAGTCGGTCCAATTCTGCTCTTTAGAGACTTTGCCTGTTACCGAATCAGCCATGTTTTTCTCCTTTTttga > 2:42371/1‑143 (MQ=255) cAAGGGCTAGCTCGGTAAATTCCCCGGCGGTACACGGAAGCACGTGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTttgat < 1:56333/143‑1 (MQ=255) ggCCGAGCTTGGTAAATTGCCCTGCGGGAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTttgattga < 2:674031/143‑1 (MQ=255) ggCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTttgattga < 1:821743/143‑1 (MQ=255) ccAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACt > 2:295412/1‑143 (MQ=255) gcctGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAACCAGCCATGTTTGTCTCCTGTTTTGATTGACTTGcc < 2:783528/140‑1 (MQ=255) gtGGTAGATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCtt < 2:882414/142‑1 (MQ=255) tagacggCCCGGCGGGAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCt < 1:225814/137‑1 (MQ=255) ggcggTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCg < 1:111084/143‑1 (MQ=255) cggTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTCTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGaa < 1:802264/143‑1 (MQ=255) gAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAAGTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTCCCTTATCTTCGTTTTACGAACAAAAAAAt > 1:613512/1‑143 (MQ=255) gAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGCCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAAt > 2:138185/1‑143 (MQ=255) aGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTc < 1:526678/143‑1 (MQ=255) gggCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTccc < 1:310178/143‑1 (MQ=255) gTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATAAGCAATGTTTTTCTCCTGTTTTGATTGTCTTGCTTTGTCTTCGTTCTCCGAACAAAAAAATTCCAGTCCTGAAg > 2:244165/1‑143 (MQ=255) gAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGa < 1:500573/143‑1 (MQ=255) aaCGGTGACACTCAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTGTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGAc < 1:42371/143‑1 (MQ=255) gagaCTACGCAGGGCGTCGGTCCAATTCTGCACTGTCGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCGTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAg < 1:205680/143‑1 (MQ=255) tAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCGATGAGCCATGTTTTTCGCCTGTTTTGATTGACTTGCCTTATCGTCGTTCTCCGAACAAAAAGATTCAAGTGCCGAAGGACTGGAAgggtga > 2:534258/1‑139 (MQ=255) aaCAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAAt > 2:863924/1‑143 (MQ=255) ggCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTCTCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGCAGGACTGGAAGGGCCAATCGatc > 2:507503/1‑143 (MQ=255) gTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGatcaaa < 1:344439/143‑1 (MQ=255) gTCGGCCCAATTCTGCACGCTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGatcaaa < 1:138185/143‑1 (MQ=255) tCGGGCCAATTCTGCACTTTAGTGACTTTGCAGGTTACCCAATCAGCCATGATTATATCTTGTTATGATTGACTTGCCTTATCTTCGTAAAAAAAAAAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGatcaaat < 2:439350/143‑1 (MQ=255) ccAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAaatcaatc < 1:7571/143‑1 (MQ=255) | GATTATCGGGCGAGTTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAATCAATC > NC_000913/4114292‑4114570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |