mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572411 | 878 (19.300) | 8 (0.190) | 8/250 | NT | 1.2% | coding (44/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572431 | 533 (12.380) | coding (64/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 572405 = | 960 (21.110) | 10 (0.290) +31 bp |
8/202 | NT | 1.3% | coding (38/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 1095504 | NA (NA) | intergenic (‑67/‑40) | insE‑4/ymdE | IS3 element protein InsE/protein YmdE | |||||
| * | ? | NC_000913 | = 572325 | 2139 (47.030) | 25 (0.600) | 9/244 | NT | 1.2% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 2030 (48.320) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 571462 | 2672 (58.750) | 3 (0.070) | 3/250 | NT | 0.11% | coding (9/798 nt) | ybcM | DLP12 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 571538 | 2732 (63.460) | coding (85/798 nt) | ybcM | DLP12 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | = 570701 | 2191 (48.170) | 41 (0.950) | 20/250 | NT | 1.9% | intergenic (+273/‑192) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570711 | 2104 (48.870) | intergenic (+283/‑182) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 570695 = | 2163 (47.560) | 53 (1.230) | 18/250 | NT | 2.5% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 2104 (48.870) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 570639 | 2172 (47.750) | 10 (0.240) | 7/238 | NT | 0.50% | intergenic (+211/‑254) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570663 | 2051 (50.060) | intergenic (+235/‑230) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 570627 = | 2120 (46.610) | 7 (0.170) | 6/238 | NT | 0.35% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 2051 (50.060) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568678 = | 2837 (62.370) | 33 (0.770) | 19/250 | NT | 1.2% | intergenic (+31/‑17) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | 568704 = | 2642 (61.370) | coding (10/150 nt) | ylcJ | protein YlcJ | |||||
| * | ? | NC_000913 | 568559 = | 2523 (55.470) | 95 (2.190) | 26/252 | NT | 3.8% | coding (245/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568576 = | 2373 (54.680) | coding (262/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||