| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,361 | 0 | C | . | 98.1% | 227.2 / ‑3.3 | 53 | pseudogene (918/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base . (21/31); total (22/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
| * | NC_000913 | 2,173,362 | 0 | C | . | 100.0% | 230.6 / NA | 52 | pseudogene (917/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (21/31); total (21/31) | |||||||||||
TTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCC > NC_000913/2173223‑2173494 || ttCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACACACAGCAATTAAAATGGTGAGCGGGATAAAAATCAGGCTTGACGAGacccccgcc > 2:47953/1‑140 (MQ=255) cACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGCTGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATAAAAATGGAGAGTGAGCTCCAACGCAGGCATGCCGCTACCACcccccca > 2:638226/1‑142 (MQ=255) gATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGt < 1:393363/143‑1 (MQ=255) tGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCATTCAAAAGGTTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTcc > 1:551549/1‑143 (MQ=255) aCGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGGATGTccccg > 2:1007599/1‑141 (MQ=255) cGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAACATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCcagc < 1:775311/143‑1 (MQ=255) ggCGACCGCCATCGCCACGAAGACGCCCATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCcagca < 1:74583/143‑1 (MQ=255) gtCGCCACGATGCAGCCGATCGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAACCAGCACTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCgg < 2:744544/142‑1 (MQ=255) tCGCCACGAGGCAGCCGTTGGTGGCAAGACCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGa < 2:672344/143‑1 (MQ=255) tCGCCACGAAGAAGACGCGGGTCGCAAGACTGCCATACGTCAGCACCTGAGTACCCGGCACACTAACAGCTTTTAAAATGTTCAGTGGGAAAAGAATCAGGCTTGCCGATACCA‑‑CCGCCTTATGTCCCAGCAGCAACGCCGGa < 2:524534/143‑1 (MQ=255) ccACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGGAACGCCGGGTCa > 1:63784/1‑143 (MQ=255) cGAAGAAGCCGAGGGTGGCAAGATCGCCAAACGGGAGCACCTGACTACCCGGCACACAAACAGCAATTAAAATGTTGACTGGTATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAgg < 1:255859/143‑1 (MQ=255) gaaaaaGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACACGGCACACAAACAGCAATTAAAATGGTGAGTGGGAAAAAAATCAAGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCCGCAACGACGGAGCAAGGc > 2:331611/1‑143 (MQ=255) aagaagCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAAATAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc < 2:901297/143‑1 (MQ=255) ccGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAGAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGCCCCCGCCGCAACGCCGGATCAAGGCCCATccg > 2:13964/1‑141 (MQ=255) gATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCACCGCCGGATCAAGGCCAATCAGGa > 1:759981/1‑143 (MQ=255) gtggCAAGATCGCCAAACGGCAGCACCTGATCACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGGTAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAGGGCCAATCAGGAACTc > 1:101304/1‑143 (MQ=255) gCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTg > 1:970952/1‑143 (MQ=255) aTCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGGAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑Accgc > 1:31759/1‑143 (MQ=255) aTCACCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGTATCAAGGCCAATCAGGAACTCCTG‑Accgc < 2:857564/143‑1 (MQ=255) cggcAAACGGCAGCACCTGATTACACGGCACACAAACAGCAATTAAAATGGTGAGTGGGAGAAAAATCAGGCTTGCCGATACCA‑‑TCGCCGTATGTCCCAGCAGCACCGCCGCCACACGGCCACACAGACACCCCCG‑Accgccg > 2:435462/4‑143 (MQ=255) gCCAAACGGCAGCACCTGATTACCCGGCACACAAACCGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCCTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGa > 2:795390/1‑143 (MQ=255) gCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGa < 1:215964/143‑1 (MQ=255) cgggCAGCACCTGATTACCCGTCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGTCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGATCTCCTG‑ACCGCCGAACT‑Tc < 2:115220/141‑1 (MQ=255) cagcaCCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCt < 1:727073/143‑1 (MQ=255) gcaCCTGATTATCCGGCACACAAACAGCAATGGAGATGGTGAGTGGGATAAAAACCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGt < 2:685141/143‑1 (MQ=255) gcaCCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGt < 1:1040930/143‑1 (MQ=255) caCCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc > 1:101055/1‑108 (MQ=255) caCCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc < 2:101055/108‑1 (MQ=255) ccTGGTTACCCGGCACACAACCAGCAATTAAAGTGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTaaa < 2:672355/143‑1 (MQ=255) ccTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTaaa > 2:710688/1‑143 (MQ=255) cTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAGATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAAc > 1:483895/1‑143 (MQ=255) tACCCGGCACACAAGCAGCAAGTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGCTACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAACGACAATCCGAAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTa < 2:202992/143‑1 (MQ=255) ggCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGCACTCCTG‑ACCGCCGACCT‑TCGCCTGTACCCCACTACGAGc > 1:128816/1‑143 (MQ=255) caAACAGCAATTAAACTGGTGGGTGGGAAGAACATCAGGTCTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAGCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCtt < 1:376613/143‑1 (MQ=255) aaaCAGCAATTAAAATGGTGAGTGGGATAAAAATGAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTa < 1:639880/143‑1 (MQ=255) aaaCAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATATCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAACCGACTACGAACCTGCtca > 1:198281/1‑141 (MQ=255) gcgacAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGc < 2:704053/139‑1 (MQ=255) gCACTTAAACTGGCGACTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt < 1:396679/143‑1 (MQ=255) cAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATg < 1:948656/143‑1 (MQ=255) aggtAAAAGGGGGAGTGGGATAAAGATCAGGCTTGCCGATACCA‑‑CCGCCGGATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATgg < 2:952664/140‑1 (MQ=255) aaTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATgg < 1:934521/143‑1 (MQ=255) aaTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGAGCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGACTGTAAACGACAACACGCCTGCATAGCGATgg > 2:7033/1‑143 (MQ=255) ggATAAAAATCAGGCTTGCCGATACCA‑‑ACGCCGTATGTCCCAGCAGCAACGCCGAATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGAAAACGACTACGAGCCTGCATAGCGATGGGCGTTAAAccagccaac > 2:614194/1‑141 (MQ=255) caaacgtCAGGCTCGCCGACACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGCCCAATCAGGAACGCCTG‑GCCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatgatg < 2:896175/137‑1 (MQ=255) aaaacTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATAAGGAGCTCCTG‑CCCGCGGAACG‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATgg < 1:1197347/143‑1 (MQ=255) aaaaaTCAGGCTCGCCGATACCA‑‑CCGCCGTATGTACCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATgg < 1:1068369/143‑1 (MQ=255) aaaTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGCTAAACCATCCATAATGGGt > 1:924117/1‑143 (MQ=255) aagcccgCTTGCCGTTACCA‑‑CCGCCGGATGTCCCCGCAGCAACGCCGGATCAAGGCCAATCAGGAACGCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGtt < 2:384844/137‑1 (MQ=255) aTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGttt < 1:590650/143‑1 (MQ=255) aTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTAAGGCAACGTC‑AACTAACACCGCGAAAC‑ATTACGATCCTGCTTAGCGCTGAGCGCTGAACCCTCCATGATGGGttt > 2:532358/1‑143 (MQ=255) cAGGCTTCCCGATCCCA‑‑CCGCGGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTaa < 2:810216/143‑1 (MQ=255) ttGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTCAGCGATGGGCAGTACACCATCCATGATGGCTTTCATCAca > 2:722524/1‑142 (MQ=255) tGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc < 1:1024475/143‑1 (MQ=255) || TTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG‑ACCGCCGAACT‑TCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCC > NC_000913/2173223‑2173494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |