New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	2543 (39.280)	272/280	0.0	97.8%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	59 (0.900)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

AAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT  >  NC_000913/566637‑566912                                                                                                                                             |                                                                                                                                        aaGATCGCAGAAATTAAAGCTACGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGa                                                                                                                                       <  2:1009956/143‑1 (MQ=255)  aggtggCAGAAATTGAAGCTAAGGTCGGACTGAGAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                      <  2:691064/138‑1 (MQ=255)    aTCGCAGAAATGAAGAGAAATTTCGTACTGATCGGAGCCAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCt                                                                                                                                    <  2:468390/143‑1 (MQ=255)      cGCAGAAATTAAAGCTATGTTCGGACTTAAAGGAGCAAGTGTATGACGTGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTa                                                                                                                                  <  2:335677/143‑1 (MQ=255)           aaaGTAAAGCTAGGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAg                                                                                                                             <  1:458207/143‑1 (MQ=255)            aaTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGc                                                                                                                            <  2:956190/143‑1 (MQ=255)                   gCTAAGTTCGGGCTGGAAGGCGCAGGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGCCGCATACGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                                                                                                     <  2:1045136/143‑1 (MQ=255)                   gCTAAGTTCGGGCTGAAAGGAGGAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                                                                                                     <  2:553037/143‑1 (MQ=255)                   gCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg                                                                                                                     <  1:943939/143‑1 (MQ=255)                           cGGACTGAAAGGAGCAAGTGTATTACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAGCCGTAATCTGATCTTACCCAGCAATAGTGGGCAcgcg                                                                                                             >  1:35128/1‑143 (MQ=255)                            ggACTGGAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACCCGCgg                                                                                                            <  2:919798/143‑1 (MQ=255)                            ggACTGAATGGAGCAAGTGTATGACCGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCgg                                                                                                            <  1:599268/143‑1 (MQ=255)                             gACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGc                                                                                                           >  2:42178/1‑143 (MQ=255)                              acggAAAGGAGCAAGGGTATGACGGGCAAAGAGGCAATGATTCATTACCTGGGTACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCt                                                                                                          <  2:628606/140‑1 (MQ=255)                                  taaGGAGCAAGTGTATAACGGACAAAGAGACAATTATTCATTACCTAGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGACCTTACCCAGCAAAAAGGGACACACGGCaaaaa                                                                                                      >  2:366668/2‑141 (MQ=255)                                  aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                      >  1:1025742/1‑143 (MQ=255)                                        gCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCCTACCCAGCAATAGTGGACACGCGGCTCAGTGAGTaa                                                                                                >  1:101374/1‑143 (MQ=255)                                          aattgtATGACGCGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc                                                                                              <  2:1094602/140‑1 (MQ=255)                                            gtgtATGACGGGCAAAGAGGCACGTATTCATTACCTGGGGACGGATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCAGCTGACCTTACCCAGCAATAGTGGCCACGCGGCTAACTGCGTACActc                                                                                            >  2:957856/1‑143 (MQ=255)                                            gtatATGACGCGCAAAGAGGCAATTATTCATTACCTGGGGACGCATGAGAGCGTAGGTGCACAGGACGTTGCCGCGGCAACAGGCGCAACCGTAATCTGATCTTACCCAGCGATAGTGGACACGCGCCTAAGTGAGTAAActc                                                                                            >  2:833474/4‑143 (MQ=255)                                             tgtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct                                                                                           <  2:613259/143‑1 (MQ=255)                                             tgtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct                                                                                           <  2:1040025/143‑1 (MQ=255)                                               tagcaCGGGAAAAGAGGCACTTATTCTTGCCGTGGGTAAGCATAAGCGGCTCTGTGCACATGACGTTGCCCCGGTAACAGGCGCAACCCTAATCTGAGCGTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca                                                                                         <  2:235564/139‑1 (MQ=18)                                               tATGACGGGCCAAGACGCAATTATGCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca                                                                                         <  2:186838/143‑1 (MQ=255)                                               tATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca                                                                                         <  1:609389/143‑1 (MQ=255)                                               tATGACGGGCAAAGAGGCAATTATGCGTGCCCTGGGGACGCAGAAGGGCGTCTGTGCGGAGGACGTTGCCGCGGTAACAGGCGCAACCGGAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca                                                                                         <  2:1059889/143‑1 (MQ=25)                                                  gACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTACGTGAGTACACTCtcagtc                                                                                      >  2:331511/1‑143 (MQ=255)                                                   aCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACCGCCCTAATCGTAAGCGGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca                                                                                     >  1:877087/1‑143 (MQ=37)                                                     gggCAAAGAGGCAATTATTCATTACCTGGGGACGAATAAGAGCGTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCACCAATAGTGGGCACGAGGCTAAGTGAGTAAACAGTCAGGCaga                                                                                   >  2:284954/1‑143 (MQ=255)                                                        cAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGAAAACTCTCAGTCAGAGGt                                                                                >  1:1184070/1‑143 (MQ=255)                                                         aaaGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg                                                                               >  1:775054/1‑143 (MQ=255)                                                           agagGCAGTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTGTCAGTCAGAGGTGAc                                                                             >  1:878392/1‑143 (MQ=255)                                                           agagGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc                                                                             >  2:1129555/1‑143 (MQ=255)                                                             agGCAATTCCTCATTCCCCCGGGACGCAGAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc                                                                           <  1:729464/143‑1 (MQ=25)                                                              ggCAATTATTCATTACCTGGGGACGCATAAGAGCGTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGCGGACACGCGGCTAAGTGAGTAACCTCCCACTCAGAGGTGACTca                                                                          >  2:363246/1‑143 (MQ=37)                                                                cAATTCTTCTGTAGCTGGGGCCGCATAAGAGCTTCTTTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca                                                                        <  2:392917/143‑1 (MQ=21)                                                                cAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca                                                                        <  1:1038426/143‑1 (MQ=255)                                                                  attattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg                                                                      >  1:558294/1‑143 (MQ=255)                                                                   gtattGACTATCTGGGGACGCAGAAGAGCGTCTTTGGACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTATGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                                     <  2:557472/142‑1 (MQ=21)                                                                     attccgtACCTGGGCACGCAGAAGAGCTTCGTTACACAGGACGTTGCCTCCGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa                                                                   <  2:776913/137‑1 (MQ=18)                                                                         aTTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAGCCGGCGCAACCGTAATCTGATCTTACCCCGCAATAGTGGACACGCGGCTCAGCGAGTACACTCCGAGGCGGAGGGGACCCACCTGGCagaag                                                               >  2:290684/1‑142 (MQ=25)                                                                          ttACCTGGGGCCGCAGAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAc                                                              <  2:689203/143‑1 (MQ=255)                                                                             gcTGGGGGCGGATGAGGGCTGCTGTGCACAGGACGTGGCCGGGGGAACAGGCGCACCGGTAAGCTGATCTGACCCGGGAATGGTGGACGCGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt                                                           <  2:109055/142‑1 (MQ=17)                                                                                  ggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCaa                                                      >  2:946/1‑143 (MQ=255)                                                                                   gagggcgaaGAGCGTCTGGCGACCGGAGGTTGCTGCGGTACCAGGCGCAACCGTAATCTGATCTTACCCAGCCATAGTGGAAACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc                                                     <  1:1131581/136‑1 (MQ=14)                                                                                    aCGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTACAGAATGAGTAAGAGGTGACCCATATGACAAAAACAGAATCCAcc                                                    >  2:846798/1‑143 (MQ=21)                                                                                        aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCCGTCAGAGGTGACTCACATGACAAGAACAGTATCAACCAGTa                                                >  1:468524/1‑143 (MQ=255)                                                                                           agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa                                             >  1:559038/1‑143 (MQ=255)                                                                                              gCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAGACAGTATCAACCAGTAAAAAAc                                          >  1:718100/1‑143 (MQ=255)                                                                                                ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAGAACAGTATCAACCAGTAAAAAAccc                                        >  1:4305/1‑143 (MQ=255)                                                                                                ttCTGCGCACAGGAGGCTGCCGCCGTAACCGCCGCTACCGTAATCTGAGCTTACCCAGCAATAGTGGCCACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc                                        <  2:24800/143‑1 (MQ=14)                                                                                                 tCTGTCCACAGGACGTTGCCGTGGCGACACACGCAACCGGAATCTGATCAAACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc                                       <  1:163238/143‑1 (MQ=14)                                                                                                   tgtgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGt                                     <  1:826177/143‑1 (MQ=255)                                                                                                      gCACAGGACGTTGCCGCGGTAACAGTCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGGaaa                                  >  2:1181465/1‑143 (MQ=255)                                                                                                       cacaCGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAc                                 <  1:237274/143‑1 (MQ=255)                                                                                                        acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAACACACCCCGTAAACa                                >  1:441377/1‑143 (MQ=255)                                                                                                        acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCGCAGGCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa                                <  1:57387/143‑1 (MQ=255)                                                                                                          cggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCACAAGTGGACACGCGTCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGc                              <  1:1005642/142‑1 (MQ=255)                                                                                                          aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCCGTAAAAAACCCCGTCAACCGc                              >  1:213292/1‑143 (MQ=255)                                                                                                          aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGc                              >  1:216950/1‑143 (MQ=255)                                                                                                          aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCCAAGTTAGTAAACTCTCAGTCAGAGGTGACTCCCATGACAAAAACAGAATCAACCAGTAGAGAACCCCGTACACAGc                              >  2:5128/1‑143 (MQ=17)                                                                                                             aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAtt                           <  2:510044/143‑1 (MQ=255)                                                                                                                 tGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGcc                       <  1:147781/143‑1 (MQ=255)                                                                                                                     gcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACCCACATGACAAAAACAGTATCAACCGGTAAAAAACCCCGTAAACAGCATTCGCCTGaa                   >  2:272368/1‑143 (MQ=255)                                                                                                                      cgGTAACAGGCACACCCGTAAACAAATCTCACCCACCAACAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGAAAAAAACCCCGTAAACAGCATTCGCCTGAAt                  <  2:525182/143‑1 (MQ=11)                                                                                                                       ggTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                      <  1:518206/58‑1 (MQ=255)                                                                                                                       ggTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                      >  2:518206/1‑58 (MQ=255)                                                                                                                            cAGGCGCAACCGTAATCTGATCTTACTCAGCAATAGTGTACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGGGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa            <  1:711531/143‑1 (MQ=255)                                                                                                                             aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAg           >  1:62099/1‑143 (MQ=38)                                                                                                                             aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCGGAATTTCGCAg           >  1:1095360/1‑143 (MQ=38)                                                                                                                              ggtgcAGCCGTAATCTGCTCTTACCCGGGCGTAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAGCCCCGTAAACAGCATTCGCCTGAATTTCGCAGt          <  2:351405/140‑1 (MQ=11)                                                                                                                               gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTCAACAGCATTCGCCTGCCTTTCGCCGTg         >  1:274575/1‑143 (MQ=255)                                                                                                                               gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAATAAAAAACACCGTAAACAGCACCCGCCTGAATTTCGCAGTg         >  1:1070940/1‑143 (MQ=255)                                                                                                                               gcgcAACCGTAATCTGATCTTACCCAGCAAGAGTGGACACCCGGCTAACTGAGCACACTCCCAGTCATCCGTGACTCACCTGCCAAAAACAGTATCAACCCGCCAAAAACCCCCTCAACAGCATCCCCCCGACGTTGGCAGTg         >  2:1179383/1‑143 (MQ=2)                                                                                                                                    gtcGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAATATCCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGcc    <  1:445486/141‑1 (MQ=2)                                                                                                                                    aCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGcc    <  2:775054/143‑1 (MQ=32)                                                                                                                                      cGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAACCAGCATTCGCCTGAATTTCGCAGTGAAGCCCt  >  2:1142790/1‑143 (MQ=11)                                                                                                                                      cGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCt  >  1:283198/1‑143 (MQ=11)                                                                                                                                             |                                                                                                                                        AAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT  >  NC_000913/566637‑566912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.