Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 710,595 | G→T | P18T (CCT→ACT) | fur ← | DNA‑binding transcriptional dual regulator Fur |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 710,595 | 0 | G | T | 98.2% | 165.5 / NA | 57 | P18T (CCT→ACT) | fur | DNA‑binding transcriptional dual regulator Fur |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (29/26); minor base C (0/1); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.82e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATT > NC_000913/710455‑710734 | gtcgtcAGACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTaa < 2:656037/143‑1 (MQ=255) gacggcAAACTGGTTCAGTTCGCGATATACCGTAGCCAGACCAATTTCTTCCCCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTaa < 2:357841/138‑1 (MQ=255) aaaCTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAATTTTAAACGAGAAAGCGTTa > 2:494533/1‑143 (MQ=255) gTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCa < 1:790049/143‑1 (MQ=255) ggaCGCTATATACCTTGGCTAGACCAATTTCGCCATGCATAGTGATCAGACGTTTGTATAAATCTTCCGTACTGACGTGATGGTTGGCCGGCTCCTGAAGAACTTCCAGGATTTTTAATCGTGTAAGCGTTACTTTCAGGCCa < 2:506319/141‑1 (MQ=255) tACGCGTTATCCCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGTCGTTTGTATAAATCTTCCGCGCTGTCGTTATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTGTCAGGCCAg < 2:915729/143‑1 (MQ=255) aCGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGc > 2:1191239/1‑143 (MQ=255) ataCCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGctttcttt < 2:36254/143‑1 (MQ=255) aGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTAtt > 2:466228/1‑143 (MQ=255) aGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTAAGGCCAGCTTTCTTTAGGGCgggagt > 2:388068/1‑139 (MQ=255) ccAATTTCTTCACCCACATCGATCAGACGTTTGTATAAATCTTCCGCACTTACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGtt < 1:44630/143‑1 (MQ=255) cAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTa > 2:960083/1‑143 (MQ=255) cAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTACGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTATAGGGCGGTATTGTTa > 2:613330/1‑143 (MQ=255) aTTTCTTCACCCATATCGATCAGCCGCTTTCATAAATCTTCCGCACTGACGTGTTGGATGCCCACCCACTGGCGAACTCCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTCGGGCGGTACTGTtctc > 2:252876/1‑143 (MQ=255) aTTTCTGCACCCATCTCGATCATACGTGTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATc < 2:255195/143‑1 (MQ=255) tttCTTCACCCATATCGATCATACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCa < 1:133892/143‑1 (MQ=255) tttCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCa < 1:544596/143‑1 (MQ=255) cttcACCCATATCGATCAGACGTTTGTATAAATCTCCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTc < 1:418031/143‑1 (MQ=255) ttcACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTACGGCTCCTGAAGAACTGCCAGGATTTTTAAACGCGTCAGCGTTACTTTCAGGCCAACTTTCTGTAGGGCGGTGTTGTTATGAGtaa > 2:675643/1‑141 (MQ=255) aCCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGc > 1:292942/1‑143 (MQ=255) cccATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTTAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCg < 2:529504/143‑1 (MQ=255) cccATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCg > 2:949070/1‑143 (MQ=255) ccATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGCTACTTTAAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCgg > 1:268649/1‑143 (MQ=255) aTCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTGTGATAATCCAGCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTc > 1:875582/1‑143 (MQ=255) aTCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTc > 1:97447/1‑143 (MQ=255) aGACGTTTGTATAAATCCTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGCTTTTTAAACGGGTCAGCGATACTTTCAGGCCAGCTTACTTTAGGGCGGTATTGTTATCAGCCATGCCGAATCTTTCCTg > 2:975519/1‑143 (MQ=255) cGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTa < 1:946241/143‑1 (MQ=255) cGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTa < 1:31957/143‑1 (MQ=255) cGTGTGTATAGATCTTGCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTa < 1:69247/143‑1 (MQ=255) gTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGCAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAg < 1:981322/143‑1 (MQ=255) agaaaTCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCg < 1:413716/141‑1 (MQ=255) taAATCTTCCGCACTGGCTTGATGGTTGTCCGGCTGCTGAAGAACTTCCAGGATTTTTAAACGTGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATTAATCATGCTGATTCTGTCCTGTTACTAAGCgg < 2:147163/143‑1 (MQ=255) aaTCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGtt < 1:250493/143‑1 (MQ=255) aTCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTGTCAGGCATGCGGAATCTGTCCTGTTACTAAGCGGtta > 1:660486/1‑142 (MQ=255) ttCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTCACTAAGCGGTTCACt > 2:596600/1‑143 (MQ=255) cgaaCTGACGTGATGGTGGTCCGGCGCCTGAAGAACTTCCAGGAGTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCa < 1:147570/140‑1 (MQ=255) gCAGTGACGGTATGGGTGTCCGGCTCCTGAAGAACTGCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCAt < 2:630217/143‑1 (MQ=255) gCACTGACGTTATGGTTGTTCGGCTTCTGTATAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTCATCATGCATCCGGACACCGTCCTGGTTCTAATCGGTTCACTTCag > 2:800754/1‑142 (MQ=255) gACGTTATGGTTGTCCGGCTCCTGAAGATCTTCCAGCATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTagaa < 2:458391/143‑1 (MQ=255) aCGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTagaag > 1:1104441/1‑143 (MQ=255) tGGTTGTCCGGCTCCTGAAGAACGTGCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGa < 2:339433/143‑1 (MQ=255) tGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCCGACACGAGCGGTCTGTCCTGTTACTAAGGGGTTCACTTCATTAGAAGCAGTGCCAGa > 1:873247/1‑143 (MQ=255) ccGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAAtt > 1:1125964/1‑143 (MQ=255) gCTCCTGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTAAGGCCAGCTTTCATTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACCTCCTTAGAAGAAGTGGCAGAATTTGc > 1:1097747/1‑143 (MQ=255) tGAAGAACTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATATGTCATGATACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTg > 1:551007/1‑143 (MQ=255) agaaCTTCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTgaga > 1:782358/1‑143 (MQ=255) tCCAGGATTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACGTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGc > 1:1814/1‑143 (MQ=255) ctttttAAACGCGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGTTCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCa < 1:220093/142‑1 (MQ=255) aTTTTTAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGGATCTGTCCTGTTACTAAGCGGTTCACTTCATTCGAAGAAGTGACAGAATTGGCTCTTGAGATAATGCTTTTCa > 1:249035/1‑143 (MQ=255) ttttAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGGCCTGTTCCCAAGCGGTTCACTTCATTAGCAGACGTGATGGTTTTTGCTCTCGAGATTATTCGTGTCAtt > 1:812695/1‑143 (MQ=255) ttAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATCGTCATCAGGCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATtat < 1:1191239/143‑1 (MQ=255) tAAACGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATtata < 1:949070/143‑1 (MQ=255) aaaCGGGTAAGCGATACTTTCAGGCCAGCTTTCTTTAGGGAGGTATTGTTATCAGTCATGCGGAATCTGTCCTATTACTAAGCTGTTAACTGCATTAGAAGAAGTGACAGAATTTGCATATGAGATAATGCGTATCATTATAg > 2:69093/1‑143 (MQ=255) aaCGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGACGTGCCAGAATGTGCTCTTGAGATCATGCGTATCATTATAGa > 2:644546/1‑143 (MQ=255) aaCGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGa > 1:97324/1‑143 (MQ=255) aaCGAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGGCCTGGTACTAAGCGGTTCACGTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGa < 1:390944/143‑1 (MQ=255) gAGTAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTGTCATTATAGAAtt > 1:776965/1‑143 (MQ=255) | GTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATT > NC_000913/710455‑710734 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |