New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	1300 (40.230)	242/262	NT	98.1%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	26 (0.800)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

TCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAA  >  NC_000913/566641‑566907                                                                                                                                         |                                                                                                                                   tCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGAGCAACCGTAATCTGATCtt                                                                                                                              >  1:422105/1‑143 (MQ=255)   gCAGAAATTAAAGCTAAGGTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAc                                                                                                                            >  1:230642/1‑143 (MQ=255)      gAAATTAAAGCTAAGTTCGGACTCAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCGTCTGCGCACAGGACGTTGCGGCGGTAACAGGAGCAACCGTCATCTGATCTTGCCCa                                                                                                                         >  2:639656/1‑143 (MQ=255)            aaaGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATa                                                                                                                   <  2:313988/143‑1 (MQ=255)              gtcTAAGCTCTGACTGAGAGTAGCAACTGTATGGCGGGCAAAGAGGCAATTCTTCACTACCTTGGTACGCATAAGAGCTTCTGTGCACAGGACTTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt                                                                                                                 <  2:183701/141‑1 (MQ=255)              cgCTAAGGTCGGCCTGAACGGCGCAAGTCGACGACGCGCAAACAGGCAATTAGTCCTTACCTGGGGCCGCACACGCGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt                                                                                                                 <  2:500538/142‑1 (MQ=255)              aGCTCAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATGATTCATAAACTGGTGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt                                                                                                                 <  1:238933/143‑1 (MQ=255)              aGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt                                                                                                                 <  1:344975/143‑1 (MQ=255)               gCTAAGTTCGGACTGAAAGGAGCGAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGGTGCCGCGGTAACAGGCGAACCCGGAATCTGCTCTTACCCAGCAAAAggg                                                                                                                >  2:14658/1‑141 (MQ=255)                cTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTgg                                                                                                               >  1:320762/1‑143 (MQ=255)                 tAAGTTCGGCCTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGa                                                                                                              <  2:479580/143‑1 (MQ=255)                         gACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAAGCTGATCTTACCCAGCAATCGTGGACACGCGGc                                                                                                      >  1:65858/1‑143 (MQ=255)                           cTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGATTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGAGGACACGCGGCTa                                                                                                    >  2:95798/1‑143 (MQ=255)                              aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                 >  1:328722/1‑143 (MQ=255)                              aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTGCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAGAGTGGACACGCGGCTAAGt                                                                                                 >  2:473013/1‑143 (MQ=255)                                aGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa                                                                                               >  1:41850/1‑143 (MQ=255)                                  aaGCAAGCGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt                                                                                             <  1:586616/142‑1 (MQ=255)                                   aGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCAGTGCACAGGAGGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAGGCGGCTAAGTGAGTa                                                                                            >  2:9374/1‑143 (MQ=255)                                     cAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                                                                                          <  1:421268/143‑1 (MQ=255)                                               aCGGGCAAAGGGGCGATTATTGATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca                                                                                <  2:108915/143‑1 (MQ=255)                                                 gggCAAAGAGGCACTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga                                                                              <  2:265594/143‑1 (MQ=255)                                                 gggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGGAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGACAAAACTCTCAGTCaga                                                                              >  1:30445/1‑143 (MQ=255)                                                      aaGACGCAATTATTCCTTACCTGGGGACGCATAAGAGCTGCTGTGCACAGGACGTCGCCGCGGTAACAGGCGCCACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa                                                                         <  1:427305/143‑1 (MQ=25)                                                              attattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg                                                                 >  1:483033/1‑143 (MQ=255)                                                                tattCATTACCTGGGTACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTTATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc                                                               <  2:612129/143‑1 (MQ=255)                                                                     gttACCTGGGGACTCATAAGAGCTTCTGTTCACTTGGCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                          <  2:157990/142‑1 (MQ=21)                                                                          cTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa                                                     >  1:183913/1‑143 (MQ=255)                                                                              ggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGTGCACACGTAATCTGATCTTACCCTGCAATAGTGGACACGCGGCTAAGTGAGTAAATTCTCAGTCAGAGGTGACTCACATGAC‑AAAACAGTATCAAc                                                <  2:489968/143‑1 (MQ=21)                                                                               gagccATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc                                                <  2:577866/139‑1 (MQ=255)                                                                               gACGCATAAGAGCTGCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc                                                <  1:227031/143‑1 (MQ=255)                                                                                      aaGGGCTCCTGTGCATATGCCGTTGCCGCGGTAACAGGCGCCGCCGTCATTCGATCTCAGAAAGCAATAGTGGACTCGCGGCTAAGTGAGTACACTCTCCGTCAGCGGTCCCTCACATGACAAAAACAGTATCAACCAGTaat                                         <  2:427377/143‑2 (MQ=9)                                                                                      aaGAGCTTCTGTGCACAGGACGTTGCCGCGGTACCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAGGACAAAAACAGTATCAACCAGTaaa                                         >  1:475531/1‑143 (MQ=255)                                                                                       agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCACCCAGTcaaa                                        >  2:234838/1‑143 (MQ=255)                                                                                       agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa                                        >  2:72657/1‑143 (MQ=255)                                                                                                 tgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCGAGCAATAGTGGACAGGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCCCATGACAGAAACAGTCTCAAGCAGGACGAAACCGCGTag                              >  2:287370/1‑142 (MQ=18)                                                                                                    acagaccGTTGCCACAGTAACAGGCACAACCGTAATCTGATCTAACCCAGCAATAATGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa                           <  2:533461/137‑1 (MQ=14)                                                                                                    acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACGCTCAGCCACCGGTGCTTCATGTGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa                           >  1:270332/1‑143 (MQ=17)                                                                                                      aGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGc                         >  1:257748/1‑143 (MQ=255)                                                                                                        gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGAAGACACACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAt                       >  2:40481/1‑143 (MQ=255)                                                                                                           gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCGTACCCAGTAATAGTGGACACGCGGCTCTGTGTGTAAACACCCCACCAAAACGGATTGACATTACAATAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCg                    <  1:473013/143‑1 (MQ=17)                                                                                                                     tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACACCGTGAACAGCATTCGCCTGAATTTc          >  1:103483/1‑143 (MQ=255)                                                                                                                        cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa       <  2:56237/143‑1 (MQ=38)                                                                                                                         aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCGAAGTGAGTAAACGCTCAGTCAGAGGGGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAACCCGTAAACAACATTCGCCTGAATATCGAAg      >  2:561361/1‑143 (MQ=11)                                                                                                                          ggggcAACCGTAATCGGATCTCACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAACCTCTCATTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt     <  1:23522/140‑1 (MQ=11)                                                                                                                          ggCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt     >  1:63823/1‑143 (MQ=37)                                                                                                                             gcACCCGTAAACTGATCTCACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTCCCCAACAGAAAAAAGCCAACTAAACTGCATTCGCCTGAATTTCGCAGTGaa  <  1:302083/143‑1 (MQ=11)                                                                                                                                         |                                                                                                                                   TCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAA  >  NC_000913/566641‑566907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.