| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,778,124 | A→C | 12.5% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,778,124 | 0 | A | C | 12.5% | 105.2 / 7.0 | 48 | intergenic (+342/+22) | ypjF/ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA |
| Reads supporting (aligned to +/- strand): ref base A (20/22); new base C (4/2); total (24/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.87e-01 | |||||||||||
CAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATACCTGC > NC_000913/2777984‑2778265 | caATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAAAtg > 2:69053/1‑143 (MQ=255) tCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTgg < 1:386700/143‑1 (MQ=255) acgggACGGTGTAAGGACGACACGAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCttt < 1:57992/140‑1 (MQ=255) ggACGGTGTAAGGACAACAGCAACAAAAACAGGAAGTTAGAAGTCTCAGCGAATCACCGACCAGACGGTGAGGAGACATAAAAGGATACGGAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTc < 2:349098/143‑1 (MQ=255) agggTGTAAGGTTCACGCCGACCAACACATTATGTTAGAAGTCCAAGCAAATCACCGACCAGACGGTGAGGAGACATAAAAGGATACGCGAAGGTGCCGCGGCTCCTGGTAACATGAAAGCCCACATCTGTGGGCtttcatgt < 2:8008/141‑6 (MQ=255) aCGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTGACATGAAAGCCCACAGATGTGGGCTTTTTCGt < 1:508301/143‑1 (MQ=255) gtgtAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGa > 1:639907/1‑143 (MQ=255) gtgtAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGa > 1:217933/1‑143 (MQ=255) ggACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCa < 1:625458/143‑1 (MQ=255) gACAACACCAACAAAAACAGGAAGTTAGAAGTCCCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAg < 1:547294/143‑1 (MQ=255) aacaCCAACAAAAACAGGACGTTAGAAGTCTCCGCAAAACACCGACCAGACCGTCACGAGACATAAAAGCAAACGCCAAGAAGCCCCGGCTCCTGGTAACATGAACGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAAc < 1:527723/143‑1 (MQ=255) cacCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGa > 1:330899/1‑143 (MQ=255) acCAACAACAACAGGAAGTTAGAAGTCCCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGAc < 1:503523/143‑1 (MQ=255) caacaaAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAACAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCCCTGCCGTTGCTGGTCAGAGCGAccg > 2:579575/1‑142 (MQ=255) caacaaAAACAGGAAGTTAGAAGCGTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCa < 2:325082/143‑1 (MQ=255) aacaaAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAg > 1:126462/1‑143 (MQ=255) aacaaAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCGTTTTCGTTGATGGTCAGAACGACCAg > 1:175733/1‑143 (MQ=255) ttAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTAcc > 1:190547/1‑143 (MQ=255) ttAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCGTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTAcc > 1:92562/1‑143 (MQ=255) aGAAGTCTCAGCAAAACACCGACCAGGCCGTGAGGAGACATAAAAGGATGCGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACcgc < 2:483322/143‑1 (MQ=255) aGTCCCAGCAAAACACCGACCAGACGGTGAGGAGACATACAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGtt < 1:389864/143‑1 (MQ=255) tcAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCAc > 1:442411/1‑143 (MQ=255) aGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACATCTGTGGGCtt < 1:441666/92‑1 (MQ=255) aGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACATCTGTGGGCtt > 2:441666/1‑92 (MQ=255) aaaCACCGCCCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGAt < 1:10539/143‑1 (MQ=255) acacGGACAGGACGGTGAGGAGACATAAAAGGATACGCAAGGGAGCCGCGGCTTCTGGTAACTTGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTc < 2:284574/143‑1 (MQ=37) aggcGGTGAGGAGACATAAAAGGAGACGCAAAGGAGCCGCGGCGCCTGGTAACATGAAACCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGc < 2:317090/140‑1 (MQ=255) gACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCa < 2:639907/143‑1 (MQ=255) aggagACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGCTTCCACACCGGCACTATGGc > 1:434520/1‑143 (MQ=255) aTAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATaccc < 1:196873/143‑1 (MQ=255) tAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAGGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATacccc < 2:84866/143‑1 (MQ=255) aaaGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTGTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATaccccac > 1:587322/1‑143 (MQ=255) aTACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTGTTTCGTTGATGGTCAGAAAGACCAGTTCACACCAGCTACCGCGTTGCGCGGGGAGTCGACACCGGACCTATGGCTATCCCACGCCCCaa > 1:39373/1‑143 (MQ=255) cGCACAGGGGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCCCGGGGTTTCCACTCCGGCACTATGGCTATACCCCACCCCAAGAt < 2:390160/143‑1 (MQ=25) gCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCCCTATGTCTCGAACCCACCCCAAGATg > 2:235358/1‑143 (MQ=25) cAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTACACCCCCGCCCAAGATGc > 2:367379/1‑143 (MQ=255) aaaGGCGCCGCGGCTCCTGGTAACATGAGAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGcc < 1:127772/143‑1 (MQ=255) gAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGATCCACGGGGAGTCCACACCGGCACTATGGCTATGCCCCACCCCACGATGCCCGCt > 1:26624/1‑143 (MQ=255) ggcgcgGGCCCTGGGAACATGCAAGCCCACAGATGTGGGCTTGTTCGTTGATGGCCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTa < 2:36299/141‑1 (MQ=18) ccGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGCTTCCACACCGGCACTATGGCTATACCCCGCCCCCCGCTGCTCGCtgca > 1:9274/1‑140 (MQ=21) gcgGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCCCCCCCCGCTGCCCCCTTCACg > 1:7269/1‑143 (MQ=21) cTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCCCTATGGCTATACCCCACCCCAAGTTGCCCGCTTAACGTCct > 1:125983/1‑143 (MQ=255) gTAACATGAAAGCCCACAGATGTGGGCTTTTTCGGTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGTATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGaa < 2:638084/143‑1 (MQ=255) caaaGCCCACATCTGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGCGATTCCACACCGCCACTATGGCTATACCCCACCCCACGATGCCCGCTGAACTTACTGCTGAATGCGGCt > 2:518437/2‑143 (MQ=17) aaGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTATCGTACTGCTGAAAGAGGCttt > 2:117650/1‑143 (MQ=255) aGCCCACATCTGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGAGTCCACACCGGCACTACGGCGATACACCTCCCCAAGATGCCCGCTTCACGTACTGCTGCATGAGGCGTTa > 2:283973/1‑143 (MQ=17) gCCCACATCTGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTaa > 1:493399/1‑143 (MQ=255) gATGTGGGCTCTTTCGGTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGCGGAGTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATAcctgc < 2:416731/143‑1 (MQ=255) | CAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGGGATTCCACACCGGCACTATGGCTATACCCCACCCCAAGATGCCCGCTTAACGTACTGCTGAATGAGGCTTTAATACCTGC > NC_000913/2777984‑2778265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |