| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,114,431 | G→A | 100% | N14N (AAC→AAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,114,431 | 0 | G | A | 100.0% | 87.5 / NA | 28 | N14N (AAC→AAT) | fpr | flavodoxin/ferredoxin‑NADP(+) reductase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (14/14); total (14/14) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAATCAAT > NC_000913/4114306‑4114569 | tttACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAGACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGGGTCGGTCCAATTCTGCACTTGAGTGAc > 1:12162/1‑143 (MQ=255) aTAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGc > 2:246142/1‑143 (MQ=255) tAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCCAGGCCAAGCTTGGTAAATTGCCCGGCGGTCAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGcc < 1:450847/143‑1 (MQ=255) gTAGGCGGGCTGGGCGCGTTCGCCGTCGAGTGCAAGGCCAAGCGTGGTAAAGTGCCCGGCGGTAAGCGGAAGCACGTGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTa < 2:595874/143‑1 (MQ=255) gTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTa < 1:246142/143‑1 (MQ=255) cgcTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCaaac > 1:14951/1‑141 (MQ=255) tGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGCAAATTGTCCTGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGCGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGc < 1:327396/143‑1 (MQ=255) tGGACGCGCTCGCTGTCGTTTTCAAGGCCAAGCTTCGTATATTGCCCGGCGGTAAACGGACGCACGGGGGCGTCACCGGTTAGACTAAACAGGGCGTCGGTCCAATACTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGc < 2:528127/143‑1 (MQ=255) aCGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACTGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCAt < 1:51175/143‑1 (MQ=255) cgTTCGCGGTCGATTTCAAGGCCAAGCTTGGTAAATGGCCGGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGtt < 2:446845/143‑1 (MQ=255) ttCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGtttt > 1:260640/1‑143 (MQ=255) aTTTCAAGGCCAAGCTTGGCAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACCGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGttt < 1:157976/143‑1 (MQ=255) gCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGAc < 1:428434/143‑1 (MQ=255) ttGGTAAACTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACTGGGCGGCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAAGCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCtt < 2:404957/143‑1 (MQ=255) tGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTa > 1:245202/1‑143 (MQ=255) tGCCCGGCGGTAAACGGAAGCACGGGGGCGTCAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGtt < 1:82583/143‑1 (MQ=255) cccGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCCCCTGTTTTGATTAACTTGCCTTATCTTctctct > 2:417312/1‑138 (MQ=255) cggcggTAACCGGAAGCACGGGGGCGCGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTcc < 1:448452/143‑1 (MQ=255) cGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACaaaaaa > 1:528914/1‑143 (MQ=255) cGTGAACGGTGAGACTAAACAGGGCGGCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGaa < 2:238270/143‑1 (MQ=255) gTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGCACAAAAAACATATAGCCCCGAAg > 2:416520/1‑143 (MQ=255) gTGAACGGTGAGACTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAACAATTACAGTCCCGAAg > 2:373684/1‑143 (MQ=255) gagaCTAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAg > 1:361155/1‑143 (MQ=255) tAAACAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCGCa > 1:423098/1‑143 (MQ=255) aaaCAGGGCGTCGGTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCaa < 1:80122/143‑1 (MQ=255) ggTCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGaacaaatca > 2:56363/1‑143 (MQ=255) tCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCTAGTCCCGAAGGACTGGAAGGCTCAATCGATCAaatcaat > 2:89332/1‑143 (MQ=255) tCCAATTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTCCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGCCCCGAACGACTGGAAGCCTCAATCGatcaaaccaac > 2:77767/1‑142 (MQ=255) | TTTACATAGGAGTAGGCGCGCTGGACGCGTTCGCCGTCGATTTCAAGGCCAAGCTTGGTAAATTGCCCGGCGGTAAACGGAAGCACGGGGGCGTGAACGGTGAGACTAAACAGGGCGTCGGTCCAGTTCTGCACTTTAGTGACTTTGCCTGTTACCCAATCAGCCATGTTTTTCTCCTGTTTTGATTGACTTGCCTTATCTTCGTTCTCCGAACAAAAAAATTCCAGTCCCGAAGGACTGGAAGGCTCAATCGATCAAATCAAT > NC_000913/4114306‑4114569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |