| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,637,646 | +T | coding (5/1500 nt) | pitA → | metal phosphate:H(+) symporter PitA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,637,645 | 1 | . | T | 97.8% | 132.1 / NA | 46 | L2L (CTA→TTA) | pitA | metal phosphate:H(+) symporter PitA |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base T (24/20); minor base G (1/0); total (26/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AATTATATAAGATAATTATTTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑C‑TACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGC > NC_000913/3637504‑3637779 | aaTTATATAAGATAATTATTTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑C‑t > 1:610621/1‑143 (MQ=255) tataAGATAATTATTTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCCAAATGGCGTAACGTCCTATG‑C‑ttccct > 2:833975/1‑138 (MQ=255) taAGATAATTATTTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACAttt < 1:577678/143‑1 (MQ=255) aGATATTTATATGTCGAGTGATATCCATACAGGGGGCAAATCAAAAAAAGTCTATAATTCACTTTGCCCGCGCCGCGAAATTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACAtttgt < 2:276664/143‑1 (MQ=255) attattTTTTGAGTGAAATCCCTACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGGCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCt < 2:618258/143‑1 (MQ=255) attattTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTCCATTTGTTTGCt > 1:693862/1‑143 (MQ=255) attTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTAACTTTGCCCGCGGTGCGGCAGGCACTGACAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGc > 1:974014/1‑143 (MQ=255) ttttttGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCACGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCATCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGcc > 1:1128031/1‑143 (MQ=255) tttttGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCt < 1:1115138/143‑1 (MQ=255) aGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAAGGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGAttt < 2:580212/143‑1 (MQ=255) tGAGATCCATACCGGGGGCAAATCAAAGAAAGTCTATATTTCACTTTGCCCGAGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGc < 2:438682/143‑1 (MQ=255) tGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGACACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGCCCTGGaactgc > 2:440152/1‑138 (MQ=255) tCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACACTTGCTTGCTGGCCCGGATTTGCACAcc > 2:1084184/1‑143 (MQ=255) aCAGGGGGCAAATCAAAAAACGCGTATTTTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTGAAAATGGCGTAACGTCCTATG‑CTTCCATTTGTTTGCTGGCCTGGCTGTGCATACAgggat > 2:414684/1‑141 (MQ=255) aCAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGGATACCGGGcg > 1:736945/1‑142 (MQ=255) gggggCAAGTCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGtt < 1:653334/143‑1 (MQ=255) ggCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATATCCTCAAAATGGCGTAACGTGCGATG‑CGCACATTTGTTTGCTGGCCTGGCTTTGCATACGGGGCTGtgatt > 1:592230/1‑143 (MQ=255) aTCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTAttgc < 2:813406/143‑1 (MQ=255) aTCAAAAAAAGTCTATATTTCACTTAGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTAttgc < 2:260855/143‑1 (MQ=255) aaaaaaGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATGATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACTTTTGTTTGCTGGCCGGGATTTGGATAGCGGTGTGTTATTAttggttgc > 1:334619/1‑143 (MQ=255) aaaaaaGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCCTGCCGGGCCCTTATTCttgcttgc > 2:1145423/1‑143 (MQ=255) aaaaaaGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGGCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTAttgcttgc > 1:297383/1‑143 (MQ=255) cTATATTTCAGTGTGCCCGCCCCCAGAACTTCGTTGCTAACGCGGCGCGTTCATGTCCTCAAAATCGCGTACCGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCtt < 1:1145542/143‑1 (MQ=255) tataTTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCctt > 1:99376/1‑143 (MQ=255) tttGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTCGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTc > 1:130711/1‑143 (MQ=255) tGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTa < 2:661761/143‑1 (MQ=255) gccgcgAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGcc > 2:454551/1‑143 (MQ=255) gcgAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCGGTTCGACGAAGCCATc > 1:108717/1‑143 (MQ=255) aaGTGACTGCTAATGCGCTGCGTTCATGTCCTCCAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCCGGCTGTTATTATGGCTTGTACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATg < 2:304220/143‑1 (MQ=255) aaGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGATGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAACCCATCTATg > 2:1068713/1‑143 (MQ=255) gTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCGGTTATTCTTGCTTGCGCTGGCTTTTGTGCTGTTCTTCGTATACATCAATgga > 1:40469/1‑142 (MQ=255) aTAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATg < 2:974014/143‑1 (MQ=255) tGCGCCGCGTTCATGTCCTCAAAATGGCGTTACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGacac < 2:522106/143‑1 (MQ=255) gcgcCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGCTTTGCATACCGGGCTGTTATTATTGCTTGCCCTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGAcaca > 1:1074662/1‑143 (MQ=255) gcgTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACTTTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCaa < 2:604069/143‑1 (MQ=255) tttCCTGTCCTCAGAATGTCGTCACGTCCTATG‑CTTACGTTTGTTGGCTGTCCTGGATTTGCATCCCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACg < 2:331910/142‑1 (MQ=255) aTGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGt > 1:644673/1‑143 (MQ=255) tGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTg > 1:524657/1‑143 (MQ=255) tGTCCTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTAGTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTg > 1:607986/1‑143 (MQ=255) cTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTCCGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCCTGGCaa > 1:647833/1‑143 (MQ=255) cTCAAAATGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATCTCCATCCCGGGCTGTTATTATTGCTTGCACGTGCTTTTGTGCCGTTCCACGACGCGACCAGCGCTTACCATGACACAGCCCCCGCCGTCGCac > 2:908519/1‑142 (MQ=255) taataTGTCGTAACGTCCTATT‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAAcc < 1:111462/139‑1 (MQ=255) aaaTGGCGTAACGTCCTATGTT‑TACATTTGTTCGCTGGCCTGGATTTGCATGCCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCTATGGTTTCCTTGCCACAGCCGACGCGGTGGCGACCGt > 2:605946/1‑143 (MQ=255) actGGCGTAACGTCCTATG‑CTTCCATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGtt < 2:781345/141‑1 (MQ=255) aTGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGAttt > 1:181130/1‑45 (MQ=255) aTGGCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGAttt < 2:181130/45‑1 (MQ=255) gCGTAACGTCCTATG‑CTTACATTTGTTTGCTGGCCTGGATGTGCATACCGGGCTGTTATTATTGCTTGCACTACCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCt < 2:873500/143‑1 (MQ=255) tCCTATG‑CTTACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAATCGTTATCTGTACCcgc > 1:380607/1‑143 (MQ=255) | AATTATATAAGATAATTATTTTTTGAGTGAAATCCATACAGGGGGCAAATCAAAAAAAGTCTATATTTCACTTTGCCCGCGCCGCGAAAGTCACTGATAATGCGCCGCGTTCATGTCCTCAAAATGGCGTAACGTCCTATG‑C‑TACATTTGTTTGCTGGCCTGGATTTGCATACCGGGCTGTTATTATTGCTTGCACTGGCTTTTGTGCTGTTCTACGAAGCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATCTATACCCGC > NC_000913/3637504‑3637779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |