New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 257907 | 0 (0.000) | 58 (0.970) | 47/266 | 0.2 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl |
GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG > NC_000913/258542‑258824 | tgttaaaaatttgctaaattgtgccaatttggtaaaacagttgcaccacaacaggagatagcaatgacgtggccgaggggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa < 1:664121‑M2/1‑1 (MQ=255) tgttaaaaattggcgaaattttgccaacaaggtatattgtgttcatctcaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa < 1:482139‑M2/1‑1 (MQ=255) ttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggtgttagcaatgacgttcacgagctgacacccgaagaccagattgatcaaaaaatttaccgcactaggcccgcataattgtgaatgtaaat > 2:1128360‑M2/141‑141 (MQ=255) ttaaaaatttgctaaattttgccaatttggtaaaacaggggcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt > 1:221451‑M2/141‑143 (MQ=255) aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc > 1:980432‑M2/139‑143 (MQ=255) tctaaatgttgcgaatgtgggaatacagttgcatctgaacaggagatagcaatgacggtaccgagtggtcactcgaagagcagattgatcaaaaaatttacctcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa < 2:984521‑M2/13‑1 (MQ=255) taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc > 1:378158‑M2/129‑143 (MQ=255) tttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc < 2:210466‑M2/20‑1 (MQ=255) tttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc < 1:508139‑M2/20‑1 (MQ=255) ttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtcAGTGCAAAGATAATCGATTCt > 2:487099‑M2/123‑143 (MQ=255) aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaacaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc > 1:643189‑M2/118‑143 (MQ=255) aaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt > 1:678541‑M2/110‑143 (MQ=255) aaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg > 1:412240‑M2/109‑143 (MQ=255) aacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttatcgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 1:925877‑M2/36‑1 (MQ=255) aacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGGTTCTTTTTCGATTGTCTgg < 1:1123657‑M2/36‑1 (MQ=255) ttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa < 1:1122072‑M2/41‑1 (MQ=255) tgcatcacaacaggagatagcagtgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt < 2:689768‑M2/42‑1 (MQ=255) catcacaatatgaattagcaataatattactgagtagacaacagaagagcagacagaacaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc < 1:16836‑M2/44‑1 (MQ=255) aacaggagagagcagtgacgtgagcgagtggacacccgaagagcagattgatcaaaaaatttaccgcgctgtgcccgtacattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc < 1:664322‑M2/50‑1 (MQ=255) aggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTg > 1:402593‑M2/91‑143 (MQ=255) aggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccggatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAGTGTCTGGCTGTATGCGTCAACGTg > 1:53695‑M2/91‑143 (MQ=255) tagagagcaatgacgttaccgagtggacaccctaagagcagagttatcaaaaaatttaccgcactaggctcgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGaa < 2:107891‑M2/55‑1 (MQ=255) agatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGaaa < 1:797755‑M2/56‑1 (MQ=255) aatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGACTGTCTGGCTTTATGCGTCAACGTGAAACCGGCAc > 2:967450‑M2/81‑143 (MQ=255) aatgacgttaccgagtggacacccgaagagcagaatgatcaaaaaatttaccgcactaggcccgaatggccgtgaaggcaAGTGCAAAGATAATCGATTCTTTTTCGCTTGTCTGGCTGTACGCGCCACCGTGAaaccgcccc > 2:462157‑M2/81‑139 (MQ=255) tgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCg < 1:208160‑M2/65‑1 (MQ=255) gacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCgg > 1:552620‑M2/78‑143 (MQ=255) aactgtaccgagtcgacacgcgaatggcagagtggtcaaaaaatttaccgcactaggcccgtatagtcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCgg < 1:1020546‑M2/66‑1 (MQ=255) cgtcaccgaggggacacccgaagagcagatggatcacaaaatttaccgcactaggcccgtatattcgggaaggtaCGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTTTGCTTCAACGTGAAACCGGCACCGGaa < 2:969131‑M2/68‑1 (MQ=255) gttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGCTTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAg > 1:687293‑M2/75‑143 (MQ=255) ttaccgagtggatacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGt < 1:277019‑M2/70‑1 (MQ=255) accgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAACGGCACAGGAAGTGc > 2:444387‑M2/72‑143 (MQ=255) acagagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGc < 1:1085694‑M2/72‑1 (MQ=255) cgagtggacacccgaagagcagattgatcaaaaaatttacggcactaggcccgtatattcgtgaaggtaAGTGCAAACATAATCGATTCTTTTTGGATTGTATGGCGGTAGGCGTCAAGGTGAAACAGACGACGGACGTGCGt > 2:345298‑M2/70‑143 (MQ=255) cgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTGTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGt < 2:368657‑M2/74‑1 (MQ=255) agtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATGGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGa > 1:967415‑M2/68‑143 (MQ=255) ggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAt‑t > 1:642819‑M2/65‑143 (MQ=255) gtggcgtagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTg < 1:418935‑M2/82‑1 (MQ=255) cacccgacgagcagatgggtcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTg < 1:423511‑M2/82‑1 (MQ=255) cccgaagagcagattgagcaaaaaatgtaccgcactaggcccgtatattcgtgaaggtaAGTGCAAACAAAATCAATAAATTTTTGCTGGTGTGGGTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTggg < 1:487099‑M2/84‑1 (MQ=255) ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATACTCGATGCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTgggg < 1:1097676‑M2/85‑1 (MQ=255) ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggaaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGACAACATGAAAACGACACCGGAAGTGCGTgaaa‑tcaaggg > 2:90236‑M2/59‑138 (MQ=255) atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGACACCGGCCACGCAGGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCt > 1:1092072‑M2/44‑143 (MQ=255) agttaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTgg < 1:205861‑M2/102‑1 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGa > 1:682241‑M2/41‑143 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCGGGa > 1:125705‑M2/41‑143 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAACGGAAGTGCGTGAAT‑TCTGgggctgggggagggcgacaga > 2:769742‑M2/41‑136 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCGGGTGGATGGCGCGGGaa > 2:909406‑M2/40‑143 (MQ=255) tttaccgccctaggcctgtgtattcgtgagggtgAGGGCAAAGATAATGGAGTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCTGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCa < 1:841636‑M2/109‑1 (MQ=255) tgcaccgcactagggccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCa < 1:935655‑M2/109‑1 (MQ=255) ttgccgcactatgctcgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCAg < 2:797655‑M2/110‑1 (MQ=255) taccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCAgg < 1:861412‑M2/111‑1 (MQ=255) aggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGGTTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAACCCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtt < 2:208838‑M2/120‑1 (MQ=255) ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGTTGGTGCTGGTAGCGCAGCAATCCCGTTTTAc > 1:530703‑M2/20‑143 (MQ=255) tattcgttaaggtaAGTGCCAGGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCTGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACa < 2:980432‑M2/129‑1 (MQ=255) attcgtGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGCTTGTCTGGCTGTATGCGTCAAGGTGAAACCGGCACACGCAGGCCGGGCAG‑TCCGGGGCCGGCGGACGGAGCGGGGAGCGCAGGGATGCCGGTATACCGACAg > 2:564826/6‑143 (MQ=255) ttggtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGt < 2:378158‑M2/131‑1 (MQ=255) tcgtgagggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGtt < 1:462157‑M2/132‑1 (MQ=255) gcgtgaaggtaAGTGCAAAGATGATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCATGAATCCCGTTTTACCTACAGtt < 2:414992‑M2/132‑1 (MQ=255) gtGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGAAAACACTGTTCGTTAATAACCGTGGGTACTGAAT‑GAGATGGAAGCGCAGGAACCCCGTTCTACCTACAGttcc > 2:243438/2‑141 (MQ=255) ggtaAGTTCAAAGATTGTCGTGTCTTGTGCGCTTGTCCGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGGGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGtt < 1:670219‑M2/139‑1 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTCCCTACAGTTACCCGttt > 1:36745‑M2/4‑143 (MQ=255) taAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg > 2:637886‑M2/3‑143 (MQ=255) | GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAT‑TCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG > NC_000913/258542‑258824 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |