Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,560,455:1 +G 100% pseudogene (151/758 nt) glpR ← DNA‑binding transcriptional repressor GlpR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,560,4551.G100.0% 108.6 / ‑6.7 36pseudogene (151/758 nt)glpRDNA‑binding transcriptional repressor GlpR
Reads supporting (aligned to +/- strand):  ref base . (0/0);  major base G (22/13);  minor base A (1/0);  total (23/13)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATA  >  NC_000913/3560314‑3560579
                                                                                                                                              |                                                                                                                            
gcGATGACCAGCTGCGAGCCATGGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTGCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGcg                                                                                                                              <  2:119479/142‑2 (MQ=255)
   aTAAAAAGAGTCGAGCCATTGGGGATTTGCTCCGCCACTATGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGGGCCACGGCGTGTTAACCGAACTGGACGGCAGCGCCCCACCGCCATGATGGcgcag                                                                                                                           >  2:368752/1‑139 (MQ=255)
               gAGCCGTGGGGGGTTGGCTCCGCCACTTTGCGGGCGATGCGCTCTTTGTCTGCGGTCTGGGTGGCCTGGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTg                                                                                                               <  2:463726/143‑1 (MQ=255)
                               gCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAAGCAGCGCCGCACCGCCCTGATGGCGCAGGATCAGGTTTTGCTCCACCAGCTCATTg                                                                                               >  2:315513/1‑143 (MQ=255)
                                 tCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCGATGCTGGCGCCGGCTCGGTTTTTGCTCCGCCAGCTCATTGat                                                                                             >  1:32547/1‑142 (MQ=255)
                                 tCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTGTTGCTCCGCCAGCTCGTTGAg                                                                                             >  1:71403/1‑143 (MQ=255)
                                     ccACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTcg                                                                                         >  1:577822/1‑143 (MQ=255)
                                         tttGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCCGGGTCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCgcggc                                                                                     >  1:908349/1‑143 (MQ=255)
                                                 cGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTc                                                                             >  2:420784/1‑143 (MQ=255)
                                                   aTGCGTTCTTTTTCTTCGGTCTGTGTGGCTTTGTTTTCGTGCCACGGCGAGATAACCGAACAGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTg                                                                           <  1:15696/143‑1 (MQ=255)
                                                    tGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGCAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTTAGGTCGAGGCGAATAGTCTGc                                                                          >  1:682034/1‑143 (MQ=255)
                                                      cgcTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGACTAGTCTgtgc                                                                        >  2:199096/1‑140 (MQ=255)
                                                         tctTTTTGTTCGGTCTGGGTGGCCTTGCGATCGGGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCt                                                                     <  1:72046/143‑1 (MQ=255)
                                                          ctTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGTTGATGAATTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTg                                                                    >  1:417070/1‑143 (MQ=255)
                                                            ttttCTTCGGTCTGGGTGGCCGTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGAc                                                                  <  1:597486/143‑1 (MQ=255)
                                                                 ttcGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACGGGAAGCCAGCGCCGCACCGCCATGAAGGCACATGATAAGATTATGCTCAGCCACCTAACTAACGTAGAGCCGAAAACGAGGCGGGCTAACGgaga                                                             >  2:820562/1‑143 (MQ=255)
                                                                  tcGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGaa                                                            <  1:420784/143‑1 (MQ=255)
                                                                   cGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGTCAGCGCCGCACCGCCATTATGACGCAGGATCAGAAAATACAACAACAGCTCATTGAGGTCACGGCGAATAGTATGCGGGCTGACGGAGaaa                                                           >  1:390862/1‑143 (MQ=255)
                                                                      tCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATGGTCTGCGGGCTGACGGAGAAATGc                                                        >  2:772300/1‑143 (MQ=255)
                                                                      tCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGc                                                        <  1:309640/143‑1 (MQ=255)
                                                                      tCTGGGTGCCCTTGCGATCGTGCCACGGCGTGTCAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGc                                                        <  1:70365/143‑1 (MQ=255)
                                                                           gTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGACGGCAGCGCCGCACCGCCATGATGGCGCAGGCTCAGCTTCTTCTGCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTAc                                                   >  1:123254/1‑143 (MQ=255)
                                                                             ggcggtGCGAGCGTGCCGCGGGGTGGTCACCGAGCTGGTAGGCAGGGCCGCATCGCCATGATGGCGGAGGATCAGGGTTTGGTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCa                                                 <  2:147586/138‑1 (MQ=255)
                                                                               acTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTGTGCTCCGCCAGCTCATTGAGGGCGCGGCGAATAGTCTGCGGGCTGACGGAGAAAAGCTCTACCAGc                                               >  2:659083/2‑143 (MQ=255)
                                                                                cTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGCTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGct                                              >  1:342847/1‑143 (MQ=255)
                                                                                      aTCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCgg                                        >  1:626690/1‑143 (MQ=255)
                                                                                       tCGTGCCACGGCGTGTTAACCGAACTGGACGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGGTTTGCTCCGCCACCTCAATGAGGTCACGGCGAATGGTCTGCGGGCTGACGGAGAAACGCTCTACCAGCTCGCCGGt                                       >  2:22831/1‑143 (MQ=255)
                                                                                              aCGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGAATCAGGTTTTGCTCCGCCAGCGCATTGAGGTCGAGGCGAATAGTCTGCGGGCTGACGAAGAAATGATATAACAGATCTTCGGTACTGACa                                >  2:473071/1‑143 (MQ=255)
                                                                                                     gtTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct                         >  1:749130/1‑143 (MQ=255)
                                                                                                          ccGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGATGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGt                    <  1:157978/143‑1 (MQ=255)
                                                                                                           cGAGCTGGAGGGCAGCGCCGCACCGCCATGATGGCGCAGGATGAGGTGTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGtt                   <  1:211039/143‑1 (MQ=255)
                                                                                                              agtGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTaa                <  1:652986/141‑1 (MQ=255)
                                                                                                                  gAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTCCTGCCATAACCCTGCCGTTTCAccgg            >  1:272184/1‑141 (MQ=255)
                                                                                                                      gCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCGGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCCTCGGTACTGACATACCCTCGCTGCTTAACCCGTTct        >  1:605421/1‑142 (MQ=255)
                                                                                                                       cAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATGGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGa       <  1:772300/143‑1 (MQ=255)
                                                                                                                        aGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGat      >  1:20372/1‑143 (MQ=255)
                                                                                                                        aGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTAGat      >  1:647314/1‑143 (MQ=255)
                                                                                                                            ccgcACCGCCGTGGTGGCGCAGGATCAGGTGTTGCGCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataata  <  2:175284/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                            
TCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATA  >  NC_000913/3560314‑3560579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑