| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,520,504:1 | +T | 12.2% | intergenic (‑180/+167) | yjhU ← / ← yjhF | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,520,504 | 1 | . | T | 12.2% | 154.9 / 19.4 | 49 | intergenic (‑180/+167) | yjhU/yjhF | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF |
| Reads supporting (aligned to +/- strand): ref base . (19/24); new base T (4/2); total (23/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.77e-01 | |||||||||||
CCTGTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGGGGGACAGTGAACAAC > NC_000913/4520367‑4520644 | ccTGTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCGGCTTGTCCCCCATACTGTAAAGCCGGAGACGTG‑CTACg > 1:460795/1‑143 (MQ=255)ccTGTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCCTACTGTAGAGCCGGAGACATG‑CTCCg > 1:348614/1‑143 (MQ=255)ccTGTTTACACGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCg < 2:334649/143‑1 (MQ=255) cTGTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATGTTTTCTGCCTCTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCgg < 1:665160/143‑1 (MQ=255) tGTTTACCCGGCGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGc < 2:234590/143‑1 (MQ=255) gTTTACCGGGGGAGTGGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCt < 2:899114/143‑1 (MQ=255) gTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGCt < 1:521258/143‑1 (MQ=255) ggAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGCTCGCCCGCTGTTCCCCCATACTATAAAGCGAGAAACATT‑ATCCGGCTTTACAGTa > 1:214553/1‑143 (MQ=255) agTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGCGCGATCGCACGCGGTTCCCCCATACTCTAAAGCCGCAGACATG‑CTCCGGCTTCACACTactgc > 2:544886/1‑139 (MQ=255) ttGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTg > 2:644428/1‑143 (MQ=255) aTGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGCGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTAATgaca > 2:697063/1‑141 (MQ=255) tGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGCGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACAccc < 1:126246/143‑1 (MQ=255) aTGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATa < 2:466908/143‑1 (MQ=255) agATTTCCTACAGATATTTTATTCTTTTACCTGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCAGACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATaa < 2:183932/142‑1 (MQ=255) ttATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGaa < 1:723875/143‑1 (MQ=255) aCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCCTACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGtt > 2:523421/1‑143 (MQ=255) aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTGCGGCTTTACAGTATTACTGAGAAAACACCCCTCAAGCATAATCGacgactca > 2:20477/1‑136 (MQ=255) gATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCaa < 1:92471/143‑1 (MQ=255) tatTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTATTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTCCAGTATTACTGAGAATACACCCATCAAGCATAATCGAGGGTTCAata > 2:874125/1‑143 (MQ=255) ttttATTCCTTTACATGAAACAAACCAGCATACCATTTGGGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATc < 1:837995/143‑1 (MQ=255) tttATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCg < 1:120144/143‑1 (MQ=255) aTTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCGAGCATAGTCGAAGGTTCAATATCGccc > 1:354255/1‑143 (MQ=255) aTGAAATAACCCAGCTTCCTATTCTAGCGATCGCCCTCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAATGTTCAATATCGCCCCTTTTTGATc < 2:662040/143‑1 (MQ=255) aaaTAAACCAGCGTACCATTTGGGCGCTCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGcc < 2:413069/143‑1 (MQ=255) aaTAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGCAGACACCCATCGAGCGTCATCGAAGGTTCAATACCGCCCGCCTTTGGTCGCCa > 2:485698/1‑143 (MQ=255) aaTAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGACGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGCAGGTTCAATAGCGCCCCTTTTTGATCGCCa > 2:404401/1‑143 (MQ=255) cAGCATATTTTTTTAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTc < 1:403739/143‑1 (MQ=255) aCCATTTGAGCGTTCCCCCGCTGCTCCCCCATTCTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGATAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTTATCGCCAGCGATTCGTCAcc < 2:376265/143‑1 (MQ=255) gAGCGTTCGCCTGCTGTTCCCCCATACTGTAAAGCCGGAGACATT‑CTCCGGCTTTACAGTATTACTGAGAATACACCCTTCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGa < 2:70180/143‑1 (MQ=255) cGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTCTTTGATCGACATGGATTCGTCACCGTGCCGACgg > 2:611178/1‑143 (MQ=255) gATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGGACGTGGGATGTCGCCCCTTTTTGATCGCCAGCGCTTCGTCACCGTGCCGACGGt > 1:906436/1‑143 (MQ=255) aTCGCCGGTTTTTCCCCCATACTGTATAGCCTGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCTTGAAGCATAATCGAAGGTTCAATAGCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGtt < 2:457966/143‑1 (MQ=255) aTCGCCCGCGGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCGTTACAGGATTACTGAGAATACACCCATCAAGCATAAGCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGtt < 1:95657/143‑1 (MQ=255) tCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTg < 2:201072/143‑1 (MQ=255) tcccTCTTTTCCCCTATACTGTAAAGCCGGACACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGcc < 2:788747/142‑1 (MQ=255) ccGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCCGACGGTTGCCGt > 1:720432/1‑143 (MQ=255) ccGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGt < 1:748998/143‑1 (MQ=255) gCTGGTCCCCCATTCTGTAAAGCAGGAGACATG‑CTCCGGCTTTACAGTATTACTTAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGtca < 2:910607/143‑1 (MQ=255) ccATACTGTAAAACCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGAGTCAATATCGCCCCTTTTTGATCGCCAGCGGTACGTCACCGTGCGGACGGTTGCCGTCCCGCAATaaa > 1:17338/1‑143 (MQ=255) cTGTCAAGCCGGAGACATG‑CCGCGGCTGTACGGTAGTACGGAGGATACACCCATCAAGCATAGTCGCCGGGTCAGGGTCGCGTCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATg < 2:796211/143‑1 (MQ=255) aaGCCGGAGACGTG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAATGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGGGGGa < 2:119930/143‑1 (MQ=255) aaGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGCATACCCCCATCAAGCATAATCGAAGTATCAATATCGCACCTTTATGATCGCCAGCGATTCGTCACCTTGCAGACGGCTACAGTCACTCACTAAATTAtacgata > 2:32464/1‑137 (MQ=255) aaGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACACAATAAAATATAGAGGa > 1:8122/1‑143 (MQ=255) aGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATACCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGGGGGAc > 1:855151/1‑143 (MQ=255) aGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCGATATCGCCCCTTTTTGCTCGCCAGCGCTTCGTCACCCTGCAGACTGTTGCCGTCACTTACTAAATTATGGTGGaa > 1:320501/1‑142 (MQ=255) aGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGGGGGAc > 1:864706/1‑143 (MQ=255) cGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGCGGGGCAgg > 2:180687/1‑142 (MQ=255) agaCATG‑CTCGGGCTTTGCAGGATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCGTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGGGGGACAGTGaa < 1:592786/143‑1 (MQ=255) aTG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCCCTAAATTATGGGGGACAGTGcacaac > 1:545532/1‑143 (MQ=255) | CCTGTTTACCCGGAGAGTTGATGCAGATTGCCAGTGGCATGATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAGACGGTTGCCGTCACTCACTAAATTATGGGGGACAGTGAACAAC > NC_000913/4520367‑4520644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |