New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 57247148 (1.050)8 (0.240)
+TGATCTTACCCAGCAATAGTGGACACGCGGCTAA		 4/196 NT 22.4% coding (6/456 nt) ybcN DLP12 prophage; DNA base‑flipping protein
?NC_000913 = 2170235 27 (0.590)noncoding (65/1258 nt) IS3 repeat region

ACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/572331‑572471
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC  <  NC_000913/2170235‑2170199
                                                                                                                                             ||||||||||||||||||||||||||||||||||                                     
acgaccCCGGTGACTTCTGCGCTAATCGGGGACGTGTATGCGCACATACAAGCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTGTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTG                                                                       <  2:284686/137‑1
 cacCTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTCCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGA                                                                      <  2:544106/140‑1
  gacgCCGGTGACGTCGGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAACCTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT                                                                     <  2:206829/139‑1
   accCCGGTGACTTCTGCGCTAAACGGCGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATC                                                                    <  1:81933/140‑1
      cccGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCACACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTA                                                                 <  2:329100/140‑1
         gttACTTCTGCGCTAAACGGTTACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCC                                                              <  1:77764/140‑1
          tggctcCTGCTCTAATCGGGGACGTTTATGCGCACATACGATCCAAGCTCTCTTCTCACTTAACCGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCA                                                             <  2:223301/137‑1
          gaacgTCTGCACTAAACGCGGACGTTTATGCGTACATACAATCCAGACCCTCTTCTCCCTGCACAGATGCAGAAATGCACCTGCAATACTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCA                                                             <  2:141229/138‑1
           gaaTTCTGCGCTAAACGGGCACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAG                                                            <  2:4347/140‑1
              ttgTGCGCTGCACGTGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAA                                                         <  2:851165/140‑1
                  gccCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCGTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGT                                                     <  1:820799/140‑1
                            gggtctTTTATGCGCACATATAATCCAACCTCTCTTCTCCCTTCTAAGAGTCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGG                                           <  2:76010/137‑1
                                cgcTTATTCGCACATTCAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTTCGGCGGGGTCTCTGGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAA                                       <  2:498470/140‑1
                                cgcTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCCTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAA                                       <  1:133436/140‑1
                                cattaATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAA                                       <  1:199019/138‑1
                                 gtgTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAG                                      <  1:517637/140‑1
                                  ttgATGCGCACATACAATCCAACCTCTCTTCTCGCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT                                     <  2:864658/140‑1
                                  tgtagGCGCACGTACAATCCAGACGCACCTCTCCCTGCACAGATGCAGAAAGGCACCTGCAATTCTTTGCACCTAGCGTTTGACCTCTGCCGAGGTGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT                                     <  1:84270/138‑1
                                         GCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGGACTGATCTTACCCAGCAATAGTGGACACGCGGCTCAGTGAGTCca                              >  1:83739/1‑141
                                         GCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCCGCTCAGTGGGTCAt                              >  1:56679/1‑142
                                                                   ccgTCACAGAGGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG    <  1:51430/140‑1
                                                                   CCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCCAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG    <  2:837107/143‑1
                                                                   CCTTCACAGATGCAGAAATGCACCTGCAATTCCTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG    <  2:721012/143‑1
                                                                    CTTCCCAGATGCAGAAATGCACCTGCAATTCTTTGTATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC   <  2:438772/143‑1
                                                                    CTTCACATATGCACAAATGCACCGTCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGC   <  2:13381/143‑1
                                                                     TTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCGGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC  <  1:915807/143‑1
                                                                                                                                             ||||||||||||||||||||||||||||||||||                                     
ACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/572331‑572471
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCC  <  NC_000913/2170235‑2170199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.