| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1644331 = | 51 (1.110) | 3 (0.070) | 3/254 | NT | 5.7% | intergenic (‑27/+320) | ydfU/rem | Qin prophage; protein YdfU/Qin prophage; protein Rem |
| ? | NC_000913 | 1644344 = | 50 (1.140) | intergenic (‑40/+307) | ydfU/rem | Qin prophage; protein YdfU/Qin prophage; protein Rem | |||||
GTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGTAAGAATGAATCAGCCATTCGGCCTGTTCTGCAGT > NC_000913/1644190‑1644473 | caccctccatgcactgcagaccaggccgagtggctgattcattcttaccgcaggcgcgggttcgaggttaagaaagctctcagtctcgactatcggcactggataatctctgtcaggctgccttattccgaacgcccaccacg > 2:41495‑M1/143‑143 (MQ=255) ttccggttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTCAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGGAAgag > 2:899429/1‑141 (MQ=255) accctccatgcactgcagaacaggccgaatggctgattcattcttaccgcaggcgcgggttcgaggttaagaaagctctcagtctcgactatcggcactggataatctctgtcaggctgccttattccgaacgcccaccacGt > 1:787404‑M1/142‑143 (MQ=255) tccggttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGc > 2:177662/1‑143 (MQ=255) ccggtgccGCCAGCGCTCGAGGATTATGAAAGATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCg < 2:365357/143‑1 (MQ=255) accaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTACGGGACGCAc > 2:809431/1‑143 (MQ=255) caGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAACTCA‑GGCACCAGAACAAAACTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACgt > 1:553178/1‑143 (MQ=255) cagaacgggccgaatggctgattcattcttaccgcaggcgcgggttcgaggttaagaaagctctcagtctcgactatcggcactggataatctctgtcaggctgccttattccgaacgcccaccacGTGCGGGACGCACgtgg > 2:633425‑M1/127‑143 (MQ=255) cTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGACCAGGTCTAAGTAATACCCGCACGTTCCCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGcggtgg > 2:217211/1‑143 (MQ=255) tCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGCACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTggg > 2:210705/1‑143 (MQ=255) tCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTAA‑GGCACCAGCACAGGGCCAAGTAATACCCGCACGTTACCTCCAGATCCGTTGATGGAAAGTGCGGGACCCACgaggtgag > 2:233068/1‑141 (MQ=255) gacgcttATCAGATACCTGCATGGATTCACGGCCCGGCTTAAGGACCACCCGCCCAAGCGCA‑GGCACCAGAACAGGTCTACGTAACACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCg < 1:152525/138‑1 (MQ=255) ggcttAGGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTCGTGGGCGtt < 2:578434/140‑1 (MQ=255) attcttGAGATCTCTGTATGTATTCACGGCGCGGGTTAGGGCCACCCGGCCCATGCTCA‑GGCACCAGAACATGTCTAAGTATTGCCCGCACGTTACCTCCAGATCCGTTGCTGGACAGTGCCGGACGCACGTGGTGGGCGTTc < 2:739548/138‑1 (MQ=255) tATGAAACATCTGAACGGAAAGGCGGGCCGGCTTAAGGGCCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGa < 2:355217/143‑1 (MQ=255) aaaTATCTGTATGGAGTCACGGCCCGGCTTAAGGACCACCCGCCCAAGCTCA‑GGCACCAGAACAGGTCTAATTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATaa < 1:123504/143‑1 (MQ=255) atCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCa < 2:299049/143‑1 (MQ=255) cTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAAAAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGccac > 1:466888/1‑140 (MQ=255) cgaTGTATTCCCGGCCGGGCTTAAGGACAACCAGTCTCA‑CTAATGTCATCTCGACAGGTCTAAGTAATACCCGCTCGTTACCACCAGATCCGTTGCTGGAAAGTGCGGGACGCTCGTGGTGGGCGTTCGGAATAAGGCAGCCt < 2:187898/141‑1 (MQ=255) aTGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCAAGTTACCTCCAGATCCGTTGCTGGAAAGTGCGCGACGCACGGGGTGGGCGTTCGGAATAAGGCAGCGTGa > 2:202790/1‑143 (MQ=255) gtttCACGGCCCCGCTTCAGGCCACCCACCCAAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACag < 2:457375/141‑1 (MQ=255) gATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTCCGTAATACCCGCACGTTACCTCCAGATCCATTGCAGAAAAATGCGGGACGCACGAGGTGGGCGTTCGGAATAAGGCAGCCTGACag > 1:22747/1‑143 (MQ=255) gATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACag > 1:844572/1‑143 (MQ=255) aCGGCCCGGCTCAAGCACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGAtt < 1:317951/143‑1 (MQ=255) ccGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTGTCCa > 1:215547/1‑143 (MQ=255) ttAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGGGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGcc > 1:607639/1‑143 (MQ=255) tAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGGCAGAGCTTATCCAGTGCCg > 1:186824/1‑143 (MQ=255) tAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCg > 1:18776/1‑143 (MQ=255) tAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCg < 1:177662/143‑1 (MQ=255) acctGCCCAAGCTCA‑GGCTCCAGAACAGGTCTAAGTTATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCga < 1:541751/143‑1 (MQ=255) accaGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGCAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCga < 1:779085/143‑1 (MQ=255) aagaaagctctcagtctcgactatcggcactggataatctctgtcaggctgccttattccgaacgcccaccacGTGCGGGACGCACGTGGTGGGCGTTc > 2:759555‑M1/74‑99 (MQ=255) aagaaagctctcagtctcgactatcggcactggataatctctgtcaggctgccttattccgaacgcccaccacGTGCGGGACGCACGTGGTGGGCGTTc < 1:759555‑M1/26‑1 (MQ=255) caGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGAACGTTACCTCCAGCTCCGTTGCTGGAAAGTGCGGGACGCACGTGGAGGGCGTTGGGAATACGGCAGGCTGACGGGGATTATCCAGTGACGACAGTCgcga > 2:289204/1‑143 (MQ=255) cAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTgag > 1:433745/1‑143 (MQ=255) a‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGTACGTGGTGGGCGTTCGGAAGAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTc < 1:521015/143‑1 (MQ=255) ggCACCAGAACAGGTCTAAGTACTACCCGCACGTTACCTCCTGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGCGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCCATTGTCGAGACTGAGAGCTTTCt < 2:454271/143‑1 (MQ=255) ggCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCt > 1:881364/1‑143 (MQ=255) aCCAGGACAGGTCTAAGTAATACTCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCCGTGCCGATAGTCGAGACTGAGAGCTTTCTTaa < 1:895848/143‑1 (MQ=255) ccAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAAc < 2:844572/143‑1 (MQ=255) ataaCAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCt < 1:899429/141‑1 (MQ=255) aCAGGTCTACGTAATACCCGCACGCTACCTCCAGCTCCCTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGa < 1:107085/143‑1 (MQ=255) gTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAAccc > 2:567783/1‑143 (MQ=255) cTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTGCTTAACCTCGAACCagc > 1:910106/1‑143 (MQ=255) cTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGCTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTGACCTCGAACCcgc > 1:340354/1‑143 (MQ=255) aaTACCAGCACGTTACCTCCAGATCCGTGGCGGGAAAGGGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGc < 1:233068/143‑1 (MQ=255) tACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTgggg > 1:438254/1‑143 (MQ=255) tACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCgg < 1:788010/143‑1 (MQ=255) aCCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGt > 2:154825/1‑143 (MQ=255) gCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCCGCGGTAAga < 1:910787/143‑1 (MQ=255) ttACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGTAAgaatgaa > 2:819764/1‑143 (MQ=255) ccaccAGATCCGCTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGTATATGGCAGCCTGACAGCGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGTAAGAATGAATCa < 1:531067/140‑1 (MQ=255) tCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTAGAACCCGCGCCGGCGGTAAGAATGAATCAGc > 2:836401/1‑143 (MQ=255) aGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGTAAGAATGAATCAGCCAt > 2:794482/1‑143 (MQ=255) cGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGTAAGAATGAATCAGCCATTCGGc > 1:260314/1‑143 (MQ=255) cGTGGCTGGAGAGGGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGTAAGAATGAATCAGCCATTCGGc < 2:116732/143‑1 (MQ=255) gCTGGAAAGTGGGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGTAAGAATGAATCAGCCATTCGGCCTGt < 2:598361/143‑1 (MQ=255) cTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGTAAGAATGAATCAGCCATTCGGCCTGtt > 2:112874/1‑143 (MQ=255) cTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGACATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGTAAGAATGAATCAGCCATTCGGCCTGtt > 1:474307/1‑143 (MQ=255) aaGTCCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCGCGAACCCGCGCCTGCGGTAAGAATGAATCAGCCATTCGGCCTGTTCTGCa < 1:61753/143‑1 (MQ=255) GTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGTAAGAATGAATCAGCCATTCGGCCTGTTCTGCAGt < 1:897754‑M1/143‑1 (MQ=255) | GTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA‑GGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGTGGGCGTTCGGAATAAGGCAGCCTGACAGAGATTATCCAGTGCCGATAGTCGAGACTGAGAGCTTTCTTAACCTCGAACCCGCGCCTGCGGTAAGAATGAATCAGCCATTCGGCCTGTTCTGCAGT > NC_000913/1644190‑1644473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |