| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2525897 = | 45 (0.980) | 4 (0.090) | 4/244 | NT | 9.0% | intergenic (+6/+33) | yfeN/yfeR | conserved outer membrane protein YfeN/putative LysR‑type DNA‑binding transcriptional regulator YfeR |
| ? | NC_000913 | 2525920 = | 39 (0.920) | intergenic (+29/+10) | yfeN/yfeR | conserved outer membrane protein YfeN/putative LysR‑type DNA‑binding transcriptional regulator YfeR | |||||
TGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGC > NC_000913/2525778‑2526060 | tggAATGCAACATCACACATTACTGCGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTAt < 1:781628/143‑1 (MQ=255)tggAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTAt > 1:729044/1‑143 (MQ=255)gaagaaccgttcactttccaccgccgctgaagctttatgggtcgtggtacgagaccagggcaatgcgctaatggctgggcgggaaggggatccgttgtatcagatatagagtgaattcaTACTGCCGGGGCTCCCGGCAGTAt > 2:41792‑M1/120‑143 (MQ=255) cAACATCACACATTACTCCGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCa < 2:206471/143‑1 (MQ=255) caCAGCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCAc < 2:535620/142‑1 (MQ=255) aCAGCACACATGACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCAct < 2:486437/143‑1 (MQ=255) ttACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAAATTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTAACTATACATCtaa > 2:882799/1‑141 (MQ=255) aTTCCGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATc < 2:176805/143‑1 (MQ=255) aTTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGCTTGATTACTCCCGGGGCTCCCGGCTGTCTGAATTAACTCAAAATCTGATACAACGAATc > 1:422963/1‑143 (MQ=255) aTTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATc < 2:523588/143‑1 (MQ=255) cAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGCACCCAGTCTTTATCTGATACAACGGATcccc < 2:554445/143‑1 (MQ=255) cAGTATCGATATGCGGATGAAAAACTGGGCGAAGAGTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATcccc < 2:755163/143‑1 (MQ=255) atgcgacgcggcacgcgaccacggcaatgcgctaatggctgggcgggaaggggatccgttgtatcagatatagagtgaattcaTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTc > 1:285960‑M1/84‑143 (MQ=255) tCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGCTCCCCTTccc > 1:221968/1‑143 (MQ=255) tCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTccc > 1:177447/1‑143 (MQ=255) tGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAg > 1:873690/1‑143 (MQ=255) tGACTAACTGGGTGAAGATTTTAACCAGGATGCGATAAGCTACTCCATCAAATATAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTa < 1:110545/143‑1 (MQ=255) aaCTGGGCGAATATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCa < 2:765456/143‑1 (MQ=255) gCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGccc > 1:622348/1‑143 (MQ=255) cGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCGCGCGTGGGCATTAGCGCATTGACCt > 1:376261/1‑143 (MQ=255) cGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCt > 1:376238/1‑143 (MQ=255) gAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTg > 1:632903/1‑143 (MQ=255) gAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTg < 1:724794/143‑1 (MQ=255) aaGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCGCGGCAGTATGAATTCACTCTATATCTGATACAACGGACCCCCTTCCTGCCCAGCCATTAGCGCATTGCCCTgg > 2:417135/1‑143 (MQ=255) aaGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTgg > 1:607687/1‑143 (MQ=255) aGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGt > 2:357446/1‑143 (MQ=255) ttttACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGCTACAACGGATCCCCTTCCCGCCCAGCCATTAGCCCCTTGCCCTAGtctca > 1:343020/1‑142 (MQ=255) ttACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTa < 2:729044/143‑1 (MQ=255) aCCATGATGCGATAATCTACTCCATCAAATTTATCTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTAcc < 1:705192/143‑1 (MQ=255) gATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCCCTCTCTTTCTGATACTACGGATCCCCTTCCAGCCCAGACATTAACACATTGCCCTGGTCTAGTAACACGta > 1:453385/1‑142 (MQ=255) gaaggggatccgttgtatcagatatagagtgaattcatactgccgggagccccggcagtaTGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCGTGGTCGCGTGCCGCGTCGCAt > 1:285960‑M2/61‑143 (MQ=255) tCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTACCCTGGTCTCGTCCCACGTCCCATCACGCt > 2:539465/1‑143 (MQ=255) acgccATCAAATTTAACTGCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCa < 1:86399/140‑1 (MQ=255) cTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATACAGCTTCAg > 1:635028/1‑143 (MQ=255) aTCAAATTTAACCTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAgcggc < 1:146946/143‑1 (MQ=255) tcagatatagagtgaattcatactgccgggagccccggcagtaTGAATTCACTCTATATCTGa < 2:301118‑M2/20‑1 (MQ=255) tcagatatagagtgaattcatactgccgggagccccggcagtaTGAATTCACTCTATATCTGa > 1:301118‑M2/44‑63 (MQ=255) tcagatatagagtgaattcaTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGa > 1:301118‑M1/21‑63 (MQ=255) tcagatatagagtgaattcaTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGa < 2:301118‑M1/43‑1 (MQ=255) aTTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTCCCGCAATGCCCTGGTCTCGTACCACGTCCCATACACCTTCAGCGGCGCTgg > 1:381514/1‑143 (MQ=255) tAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGCATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGaaa < 1:896169/143‑1 (MQ=255) aCTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCCGCGCcggcgggaggt > 1:268540/1‑138 (MQ=255) ttCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCCGCGGTGGAAAGTGa > 1:882867/1‑143 (MQ=255) ttCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTGCCCGCGCAGACATTAGCGCATAGCCCTGGTGTCGTAACACGGCACATAAAGCGTCAGCGGCGGAGGGAAGTGa > 1:55163/1‑143 (MQ=255) gattgattACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACgg < 1:444061/143‑1 (MQ=255) tgattACTGCCGGTGCTCCCGGCAGTATGAATTCACTATATATCTGATACAACGGATCCCTTTCCCGCCCAGCCATTAGCGCAGTGTCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGttc < 2:349316/143‑1 (MQ=255) gattACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCGCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGCGGCGAGTGAACGGttct > 1:68266/1‑143 (MQ=255) ttACTGCCGGGGCTCCCGGCAGTATGAATTCACTCGATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGttcttc < 2:563246/143‑1 (MQ=255) atactgccgggagccccggcagtaTGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGACCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGttcttc > 2:41792‑M2/25‑143 (MQ=255) GGGGCGCCCGGCAGTAGGAATGCACTCTATACCGGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGCACCAAGTCCCATATAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCAc > 1:37905‑M1/1‑143 (MQ=255) gCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGGCCCACAAAGCTGCAGCGGCGGTGGAAAGTGACCGGTTCTGCCTGCGCCCCAg > 2:773521/1‑143 (MQ=255) tCCCGGCAGCATGCATTCGCTCGATATCTGATACAACGGAGCCCCCTCCCTCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAACGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCa < 2:510228/143‑1 (MQ=255) taTGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTAACACGACCCTTTAAGCTTCAGCGGCGGAGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCGACTGGc > 1:246777‑M2/3‑143 (MQ=255) | TGGAATGCAACATCACACATTACTACGGGGATTCAGTATCGATATGCGGATGACAAACTGGGCGAAGATTTTTACCAGGATGCGATAATCTACTCCATCAAATTTAACTTCTGATTGATTACTGCCGGGGCTCCCGGCAGTATGAATTCACTCTATATCTGATACAACGGATCCCCTTCCCGCCCAGCCATTAGCGCATTGCCCTGGTCTCGTACCACGTCCCATAAAGCTTCAGCGGCGGTGGAAAGTGAACGGTTCTTCCTGCGCACCAGCATCAACTGGC > NC_000913/2525778‑2526060 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |