| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,368,101 | T→C | 100% | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,368,101 | 0 | T | C | 100.0% | 49.5 / ‑6.7 | 24 | A21A (GCT→GCC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (11/12); minor base A (1/0); total (12/12) | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGC > NC_000913/2367967‑2368234 | acccGTTGTCCGCGCCCGCCCCCTCTCTTTTGTGCAGCATGGTATCCGTCCACCTAGCAAGGAAAATGAATAATGAATACCGTCGTTTTTGCCTCCTACGATATGTGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTa < 2:251068/141‑1 (MQ=255) ccgcccCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCACTGCTGTCCGCCAGTTAAGAAACTAGAGCCAt > 2:438605/1‑143 (MQ=255) cccccGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATCGGGTGGGGCACTGTATTGAAGCCCTGATGGAAGCCAGTTCCGGACTGAGCGCCAgttt > 2:637131/1‑143 (MQ=255) tGTTCAGTAAGTTATCCGTCCATCCAGCAAGCAAAATGAATAATGAAAACCGTCGTTTTTGCCTTCCACTATATTGTATGCCTTTGTATTGAAGTCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGa < 1:257622/143‑1 (MQ=255) cAGCAAGTTATCCGTCCATCAAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCATGCTGGCCGCCGATTACGAAATTAACGCCATTTTTAACGATACTaataat > 2:29982/1‑143 (MQ=255) gTTACCCGTCCATTCAGCAAGGAAAATGAATGATGATAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGt < 2:750144/143‑1 (MQ=255) cGTCCATCCATCAACGAACATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCTTGCTGGTCGTCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGaaaaa < 1:758573/143‑1 (MQ=255) cGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGaaaaa < 2:867556/143‑1 (MQ=255) gTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGGTGTTAGCGCCTTTTTTACCCGTACTGATAATCCGGGTAAAATAg > 1:171002/1‑143 (MQ=255) tagacagcagGGGAATTGAATGTTTATAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCt < 2:308381/139‑1 (MQ=255) ggAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTAAAAAAACCTAATATGGCTc > 1:767390/1‑143 (MQ=255) gAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGCAATTAGCGCCATTTTTACCCATACTGATAATACCGGTGAAAAAGCCTTTTATGGTTCg > 1:905220/1‑143 (MQ=255) tGACTATTGAAATCCGTCGTTTGTGCCTACCGCGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGTAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGc < 2:849919/143‑1 (MQ=255) taatGAAAACCGTCGTTTTTGCCTACCACGAGATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATAAGCGACATTTATACAAATACTGATAATCCCGGTGAAAAAGCCTTATATGGATAGGTGGCTCGt > 1:710977/1‑143 (MQ=255) atGATACCCGCCGTTTTTGCCTACCACGATATGGGATGTCTCGGTATTGAAGCCCTGCTGGTCGCGGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCt < 2:814587/143‑1 (MQ=255) cgtTTTTGCCTACCACGATATGGTATGCCTCGGTATTGATGCCCTGCTGGCCGCCGGTTACGAATTTAGCGCCATTTTTCCCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGaaa < 2:808184/143‑1 (MQ=255) cgtgatGGGATGCCTCGGTATTGAATCCCTGCTGGCCGCCGGTTACGAAATTTGCGCCATTTTTACTCATTCTGATAATCTCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGttt < 1:856252/139‑1 (MQ=255) gATATGGGATGCCTCGGTATTGACGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATTATCTCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTa < 1:637131/143‑1 (MQ=255) aTGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCCGAAAGAGGCCTTCCGTTTGCTGCGCCgg > 2:32829/1‑143 (MQ=255) gCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGAt > 1:405255/1‑143 (MQ=255) ctcgtcaTTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATaa < 2:867010/137‑1 (MQ=255) cTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTCCTGGTCCGGTGCCTTGTCTGCCGGCGCAACGAGGCATTCACGTTTCTACGCCGCATaa > 1:690953/1‑143 (MQ=255) gAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGGATTCCGGTTTATGCGCCGGGTAACGTTAgtca > 1:307567/1‑143 (MQ=255) ccTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGACGGAAAGAGGCAATCCGGTATATGCGCCGGATAACGTCAACCAACCGc > 2:853547/1‑143 (MQ=255) | CACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGC > NC_000913/2367967‑2368234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |