| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,521,344 | C→T | 7.3% | intergenic (+16/+249) | lysV → / ← xapR | tRNA‑Lys/DNA‑binding transcriptional activator XapR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,521,344 | 0 | C | T | 7.3% | 122.3 / 3.3 | 56 | intergenic (+16/+249) | lysV/xapR | tRNA‑Lys/DNA‑binding transcriptional activator XapR |
| Reads supporting (aligned to +/- strand): ref base C (23/28); new base T (2/2); total (26/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.57e-01 | |||||||||||
CCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑AGCGAAGCGAGTCATCCTGCACGACCCACCAAT > NC_000913/2521202‑2521486 | cccTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGTTCGCATGTTCGAATCCTGCACGACCCACCAATGTCAACACGCGccc > 2:175466/1‑143 (MQ=14) agggggGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGgcg < 2:675995/143‑1 (MQ=255) gggTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCTTTAGGGCGCttttt < 1:9339/143‑1 (MQ=255) gggTCGGCGGTTCGATCCCGTCATCACCCACCACTGCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTGTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCttttt < 2:599336/143‑1 (MQ=255) gTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTa < 1:423827/143‑1 (MQ=255) cggcggTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTAGCAGGGTCGAGTCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACt > 2:791665/1‑143 (MQ=255) gcggTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCTTTAGGGCGCTTTTTTAcatt < 2:53115/143‑4 (MQ=255) gcggTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAACGGCGCTTTTTTACTAt > 2:379867/1‑143 (MQ=255) ttCGATCCCGTCATCACCCACCACTTCGGGTAGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTga > 1:832045/1‑142 (MQ=255) cGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGa < 2:386059/143‑1 (MQ=255) gATCCCGTCATCACCAACAACTTCGGGACGTTAGCTCAGTTGGTAGAACAGTTGACTTTTAATCAATTGGTAGCAGGTTCGAATCCTAAACGACCCACCAATGTAAAAAAGCGCCATAAAGGAGCTTTTTTACTATCTGcact > 2:235073/1‑140 (MQ=14) tcatcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCaaa < 1:428311/143‑1 (MQ=255) tcaCCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGAGCTTTTTTACTATCTGCGATACTCAAAGAt < 2:555065/143‑1 (MQ=255) acccaccACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTc < 2:549192/143‑1 (MQ=255) ccacccCTTCGGGTCGGTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGa < 2:160937/143‑1 (MQ=255) accacTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTCCTATCTGCGATACTCAACGATTCGCAc > 2:879067/1‑143 (MQ=255) acTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTg > 2:898024/1‑143 (MQ=35) tCGGGTCGTTAGCTGAGTTGGCTGAGCGGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcag < 2:590742/143‑1 (MQ=255) tCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcag < 1:726013/143‑1 (MQ=33) gTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTTCAGCAgg > 2:35285/1‑143 (MQ=17) gTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGttt > 2:661109/1‑143 (MQ=32) tAGCTCTGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTCTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCTGCAGGTtcga < 1:602377/143‑1 (MQ=255) tAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttga < 1:680432/143‑1 (MQ=32) tAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttga < 1:325546/143‑1 (MQ=32) cAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttga < 1:311583/143‑1 (MQ=32) aggtGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttgag < 2:700988/140‑1 (MQ=17) ttGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAgcg > 2:156006/1‑143 (MQ=32) ggTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCa < 1:545484/143‑1 (MQ=32) agagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCg < 1:789259/143‑1 (MQ=32) agCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGaa < 2:897430/143‑1 (MQ=32) cAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGATACAGGTGAGCGCAGCGAaac > 2:710872/1‑143 (MQ=255) gTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAGAAGAGCGCACGAAAGGAGCTCTTTTACTCTCTGCGATACTCAACGGTTCGAACCTGCAGCAGGTTCGGGTTGAGCGGCGCGaaccga > 2:315879/1‑139 (MQ=11) gTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGcaacaa > 1:263473/1‑143 (MQ=17) ttGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAaacaac > 2:47401/1‑143 (MQ=32) aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGCTTTGAGTTGAGCGCAGCGCACCCACGGAGCCGCTc > 2:422231/1‑143 (MQ=255) cAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTcgc < 1:379867/143‑1 (MQ=32) aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTcgcg < 1:47401/143‑1 (MQ=32) aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTCAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGGGCAGCGAAACAACGGAGCCGCTCgcgg > 1:176420/1‑143 (MQ=17) aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGCAACAACGGAGCCGCTCgcgg > 2:501880/1‑143 (MQ=17) gTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAGAGAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGCGCTGCGCGCAACGACACAACTGTGACCCTCGCGGCGAc > 2:63040/1‑143 (MQ=11) tCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGATCGCGGCGACg > 1:581512/1‑143 (MQ=17) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGc > 2:127428/1‑143 (MQ=32) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCACAGATTCGAATGTGTCGCGAGTTTGAGTTGAGCTCAGCGAACCAACAGAGCCGCTCGCGGCGACGGGCCGacg > 2:792598/1‑141 (MQ=11) tCCTGTGCGACCCACCATGGTCACGGAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcg‑a < 2:836174/143‑1 (MQ=11) tCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcg‑a < 2:135602/143‑1 (MQ=32) cACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCGAAGATTCGAGCGTGGAGCCGGTTTGAGGAGAGCGCAGCGAGACAACGGAGCCGCTCGCGACGACGGCGCGAAGGgcg‑agcgca > 2:305937/1‑141 (MQ=11) cACGACCCACCAACGTAAGAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAGTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑agcgaa < 2:773957/143‑1 (MQ=12) ccccacccaTGTAACACAGCGCCCTAAGGGCGCTTTTTTACTATCTGCGATACGCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑agcgaagcga < 2:760412/142‑1 (MQ=11) aCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTGTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑agcgaagcga < 1:170340/143‑1 (MQ=17) tAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAAAAACGGAGCCGCTCGCGGCGACAGCCCGAAGGGCG‑AGAGAAGCGAGTCATCCTGCa > 2:542825/1‑143 (MQ=12) aaaaGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCTATGATTCAAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑AGCGAAGCGAGTCATCCTGCACGa < 1:661109/143‑1 (MQ=12) acaGCGCCCTAAACGCGCGTTTTTACAAGCTGCGATACTCACAGATTCGAACCTGCAGCAGGTTTGAGTAGAGCTCAGCGAAACAACGTAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑AGCGAAGCGAGTCATCCTGCACGAc < 1:169923/141‑1 (MQ=11) aaaGCGCCTTTAGGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑AGCGAAGCGAGTCATCCTGCACGAc > 1:146977/1‑143 (MQ=255) aaaGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑AGCGAAGCGAGTCATCCTGCCCGAc > 2:277975/1‑143 (MQ=17) aaGCGCCTTTAGGGCGCTTTTTTACTATCTGCGATACCCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGCGCGCAGCGCAACAACGGAGCCGCTCGCGGCGACGGCCCGCAGGGCG‑AGCGAAGCGAGTCATCCTGCACGAcc > 1:366393/1‑143 (MQ=11) aaGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACGCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑AGCGAAGCGAGTCATCCTGCACGAcc < 2:515637/143‑1 (MQ=17) gcCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑AGCGAAGCGAGTCATCCTGCACGACccacc > 2:471397/1‑143 (MQ=32) cccTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑AGCGAAGCGAGTCATCCTGCACGACccacca > 2:766926/1‑143 (MQ=32) ccTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑AGCGAAGCGAGTCATCCTGCACGACCCACCaa < 1:898024/143‑1 (MQ=32) ccTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCAGCTCGCGGCGACGGCCCGACGGACGCCGCG‑AGCGAGTCATACGGCACGACccaccac > 2:576566/1‑142 (MQ=11) cTAAGGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGCGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGTCGACGGCCCGGAGGGAG‑ATCGAAGCGAGTCATCCTGCACGACccaccgag > 2:884871/1‑140 (MQ=11) | CCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCG‑AGCGAAGCGAGTCATCCTGCACGACCCACCAAT > NC_000913/2521202‑2521486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |