Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,926,042 | G→T | 8.7% | C232F (TGC→TTC) | queF → | 7‑cyano‑7‑deazaguanine reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,926,042 | 0 | G | T | 8.7% | 111.6 / 2.9 | 46 | C232F (TGC→TTC) | queF | 7‑cyano‑7‑deazaguanine reductase |
Reads supporting (aligned to +/- strand): ref base G (20/22); new base T (2/2); total (22/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.24e-01 |
TGCTGAAATCAAACTGCCTGATCACCCATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTGGCGCAGTAATAGCGATTTTGTCCCATCGACCACAAGAC > NC_000913/2925901‑2926182 | tgctgAAATCAAACTGCCTGATCACCCATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGc > 2:297091/1‑143 (MQ=255) ctgAAATCAAACTGCCTGAGCCCCCATCAACCAGATTGGGGTTCGGTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGt < 2:882820/143‑1 (MQ=255) aaTCAAACTGCCTGATCACCCATCAACCAGATTGGTGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGCACTGTTCGTGGaa < 2:604988/143‑1 (MQ=255) aaTCAAACTGCCTGATCACCCATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGTACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCCTCGAAACGAGCTCC‑CGAACAGTGCGTGGAAc > 1:402748/1‑143 (MQ=255) aaTCAAACTGCCTGATCACCCATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGaa < 2:521919/143‑1 (MQ=255) aaaCTGCCTGATCACCCATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACATAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCa > 2:451300/1‑143 (MQ=255) tcTGCCTGATAACCGATCAAGCAGATTGGAGTTCGAACCAAAGTAAGAATCGTCAACGGCAAATTGACAGACAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGCACTGTTCGTGGAActcgtt < 1:34006/142‑6 (MQ=255) tGCCTGATCACCCATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCtt > 1:505776/1‑143 (MQ=255) cTGATCACCCATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTaa < 1:826358/143‑1 (MQ=255) tCACACATCAACCAGATGGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGAc < 2:147844/143‑1 (MQ=255) aCCCATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCCTCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCt > 2:13034/1‑143 (MQ=255) aCCCATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCAGACATCAAAACGAGTTCCACGAACAGTGCGTGCAACGCATCTTTAATGcccc > 2:344174/1‑142 (MQ=255) ccATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑GACCTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCAACGAACAGCGCGTGGAACGCATAGTTAATGACCTGt > 2:499968/1‑143 (MQ=255) ccATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGt < 1:634656/143‑1 (MQ=255) ccATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGt > 1:407238/1‑143 (MQ=255) aTCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGGTa > 2:7619/1‑143 (MQ=255) ccAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCtt > 1:792557/1‑143 (MQ=255) ccAGATTGCGGTTCCCTCCACACTCAGTATCGTGGACGCCAAATTGA‑GGAGAACGGTCGGCTGTGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCtt < 1:663832/143‑1 (MQ=255) cAGATTGGGGTTCGCTCAAAATCCAGTATCGTGGACGCCAACTTGACAGAGAA‑ACACTGCTGCGTTGCTTTGTCTCATTTCGTGCTCTCAACCAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTc < 2:403982/143‑1 (MQ=255) aGATTGTGGTTCGTTCTAAATTCAGTATCGTGGTTGCCAAATTGCCGGAGAA‑AAACTGCTGCGTTACCTGGTCTCATGCCGTCATCACTACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCt < 2:334517/143‑1 (MQ=255) aGATTGGGGTTCGCTACAAATTCAGTATCGTCGACGCCAAATTGACAGAGAA‑AAACTGCCGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCt < 2:447988/143‑1 (MQ=255) aGATGGGGGTTCGCTCCACAGTCAGTAGCGTGGACGCCAAATGGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTGCCACGAACAGTGCGTGGTACGCATCTTGAATGACCTGTTACGCTTCt < 1:111445/143‑1 (MQ=255) gggTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCCTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTgccagc < 1:126382/143‑1 (MQ=255) ccAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAAt > 2:701957/1‑143 (MQ=255) aGTACCGTGGACGCCAAATTGACAGAGAA‑AAACTGCCGCGTGACCTGGGCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGtt < 1:567237/143‑1 (MQ=255) tggctgCCAATTTGACAGAGTA‑ACTCTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCAc < 2:53320/138‑1 (MQ=255) cAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATAACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCACGTTATAc < 1:79136/143‑1 (MQ=255) agagAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGACAAATTGAGCGTTTACGCACGTTATACCCGTCGTgg > 1:577439/1‑143 (MQ=255) aa‑aaaCTGCTGCGTTACCTGGTATCATTACGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATATTTAATGACCTGTTACGCTTCTGCCCGCCAGACAAAATGACAGTATACGGACGCTATACGCCACGTGGCgct > 2:348569/1‑141 (MQ=255) aaaCTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTCACTGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCCCGTTATACCCGCCGTGGCggccc > 2:909871/1‑140 (MQ=255) ctgcGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACAt < 1:334962/143‑1 (MQ=255) ctgcGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCAGCTTTAATGACCTGTTGCGCTTCTGCCAGCCAGAAAAATTCAGCGTTTACGCACGTTCTACCCGTCGTGGCGGGCGGGACAt > 2:644128/1‑143 (MQ=255) ttACCTGGTCTCATTCCGTCATCACAACGAGTGCCACGAACAGGGCGTGGAACGCATCTTTAATCACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAAcc < 1:323544/143‑1 (MQ=255) cgcctctcATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTg < 1:244997/139‑1 (MQ=255) gTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTGgcg < 1:24416/143‑1 (MQ=255) aTTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTGGCGCAGTa > 1:676087/1‑143 (MQ=255) ttCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTAACGCTTCTGCCAGCCAGAAAAATTCAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCGGGGCATTAACCCGTGGCGCAGTaa > 2:450568/1‑143 (MQ=255) cGTCATCACAACGGGTTCCACGAACAGTGCGTGGAACGCATCTTTACTGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTGGCGCAGTAATAg < 2:664280/143‑1 (MQ=255) caACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACACACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTGGCGCAGTAATAGCGATTTTg < 1:297091/143‑1 (MQ=255) gTTCCACGCACTGTTCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGATAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTGGCGCAGTAATAGCGATTTTGTCCCAt > 1:802806/1‑143 (MQ=255) ttCCACGCACTGTTCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGCGCGCTTATAAAAGATTGAGGTGTCGTGCCAGCCAAGACATTAACCCGTGGCGCAGTAATAGCGATTTTGTCCCAtg > 2:190389/1‑142 (MQ=255) ttCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCAGTGGCGCAGTCATCGAGGTTTTGTcccccg > 2:560186/1‑140 (MQ=255) cACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCCGCCAGAAAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTGGCGCAGTAATAGCGATATTGTCGCCTCGAc > 2:531706/1‑143 (MQ=255) aCGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTGGCGCAGTAATAGCGATTTTGTCCCATCGAcc > 2:251666/1‑143 (MQ=255) aCAGTGCGTGGGACGCATCGTTAATGCCCTGTTACGCTTCTGCCAGCCAGTAAAACTGCGCGCTTCCGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTGGCGCAGTAATAGCGATTTTGTCCCATCGACCACaa < 2:889152/143‑1 (MQ=255) gTGCGTGGCGCGCATCTGTGATGACCTGTTACGCGTCTGCCAGCCAGAGAGATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTGGCGCAGTAATAGCGATTTTGTCCCATCGACCACAAGAc < 2:511668/143‑1 (MQ=255) | TGCTGAAATCAAACTGCCTGATCACCCATCAACCAGATTGGGGTTCGCTCCAAATTCAGTATCGTGGACGCCAAATTGACAGAGAA‑AAACTGCTGCGTTACCTGGTCTCATTCCGTCATCACAACGAGTTCCACGAACAGTGCGTGGAACGCATCTTTAATGACCTGTTACGCTTCTGCCAGCCAGAAAAATTGAGCGTTTACGCACGTTATACCCGTCGTGGCGGTCTGGACATTAACCCGTGGCGCAGTAATAGCGATTTTGTCCCATCGACCACAAGAC > NC_000913/2925901‑2926182 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |