| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,980,744 | A→T | 10.0% | intergenic (‑109/+20) | ygeA ← / ← araE | amino acid racemase/arabinose:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,980,744 | 0 | A | T | 10.0% | 93.1 / 2.4 | 38 | intergenic (‑109/+20) | ygeA/araE | amino acid racemase/arabinose:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base A (21/13); new base T (2/2); total (23/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
AGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGC > NC_000913/2980602‑2980886 | aGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa < 1:68382/143‑1 (MQ=255) ctccCAGCAACCCAGTTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTTAATGACGAACGAGACAATCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTGCTGTACATCCg < 2:317010/143‑1 (MQ=255) tccCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGCCAAACGCCTCAACGGCCAAGTGCCCAATCACTATTAACGAAAAAAGGGCCGGATGTACAGGACATCCgg > 2:915737/1‑143 (MQ=255) cccAGCAAACCAATTGTTTTCATTCCTATCTCCTGATGTGTGTTCCCGCAACAAGGGTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAAGGCCGGAGGGAGAGCACAGCCgga > 2:712279/1‑142 (MQ=255) aGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg > 1:342907/1‑143 (MQ=255) aCCATTTGTTTTCCTGCCTCTCGCCTGATGTGTGTCACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa < 2:736480/143‑1 (MQ=255) gttggaTTCCTCTCGCCTGATGTGCGTTACCGCAACAAGGCGGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCACAATAAACAAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGc < 2:168211/138‑1 (MQ=255) ttCCTCTCTCCTGAGGTGTGTTACCGCAACAAGGCGGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGatat < 1:535085/143‑1 (MQ=255) ctcCAGACGTGTGCTACCGCAACAAGGCTGAATAAGGAACGAGGCAAACGCCCCAACGGCCAAGTGCCCAATCACAATAAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCaa < 2:222902/143‑1 (MQ=255) cGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCCGCCATcc > 1:838221/1‑142 (MQ=255) gCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGCAAAAAGGGCCGGATATACAGCACATCCGCCCCGTGAAATCAGACGCCGACATTTCTCAACTTCTCGCCTGCAACCAg > 2:161914/1‑143 (MQ=255) acaaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGttt < 1:856135/143‑1 (MQ=255) aaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCCTCAGTTTGc > 1:297886/1‑143 (MQ=255) aaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCCCAACTTCTCGCCGGGCATCCGTTTGc > 2:589020/1‑143 (MQ=255) gCTGAATAAGGAACGAGACAAACGCCTCAACGTCCAAGTGCCCAATCTTTATTAACGAAAAAAGTGCCGGATGTACAGCACAGCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGtt < 1:273428/143‑1 (MQ=255) gCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGtg > 1:2411/1‑142 (MQ=255) ggAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGtt > 1:533733/1‑143 (MQ=255) gAACGAGACAAACGCCTAAACGGCCAAGAGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGAGAAATCAGACGCCGATATTTCACAACGTCGCGCCTGCCATCAGTTTGAGATCGATATGTTc > 2:724970/1‑143 (MQ=255) cGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGACATGTTCAAg > 1:81936/1‑143 (MQ=255) gaCAAACGCCTCAACGGCCAAGTGACCAATCGCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAAACAGACGCCGATATTTCTCAACTGCTCGCCTGCCAAAAGTTTGCGTTCCAGATGttaaacaaa > 2:94678/1‑136 (MQ=255) aaaCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGAc > 1:11660/1‑143 (MQ=255) aggTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGa < 2:760489/141‑1 (MQ=255) gTGCCCACTCTCTATTAGCGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAAt < 1:602660/143‑1 (MQ=255) gTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCGCGTGAAATCAGCCGACGGTATTTGTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAAt < 2:550069/143‑1 (MQ=255) gctcAATCTCTATTAACGAAAAAAGGTTCGGATGTACTTCACATCCGGCCCGTGAAATCAGACGCCGATATTGCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGa < 1:223735/140‑1 (MQ=255) cccAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGCACTTTTTAGTTTACGGAATGAg > 2:371540/1‑143 (MQ=255) ccAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGc < 1:517091/143‑1 (MQ=255) aTTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGGTTCCGGAATGAGCCAGAAAGTa > 1:43642/1‑143 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGTCCTTTTTGGTTTCCGTAATCAGCCTGAATGTag > 1:229148/1‑142 (MQ=255) gcgctgcaaGTGCGGGGTGTACAGCACATCCGGCCCGTGAGCTCAGACGCGGATGTTTCTCAACTTCTCGCCTGCCATCCGTTTGCGTTCGATAGGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGc < 2:573697/136‑1 (MQ=255) gAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCACAAACCAATGccc > 2:353817/1‑143 (MQ=255) aaaaaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCACCTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAGTGAGCGAGCAGGTACTGCTca > 1:182474/1‑143 (MQ=255) cccgATGTCCACCCCCTCCGGCCCGTGAAACCAGCCGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCaa < 1:84021/140‑1 (MQ=255) ccGGATGTGCTGTACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAAGGCCCACAAACGcga > 2:518047/1‑141 (MQ=255) ccGGATGTGCTGTACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTGTGCGTTCGATATGTTCCAGCGTGACATTTTTGGCTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGGaa > 1:383482/1‑143 (MQ=255) gATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGCATGAGCCAGAAAGTAATGCCCCAAAACACACTGt > 2:883108/1‑143 (MQ=255) aTGTACATCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGtt < 1:389857/143‑1 (MQ=255) aTGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTGCGGAATGAGCCAGCCAGTACTGCCCACAAACGGCATGtt > 1:56394/1‑143 (MQ=255) aCAGCACATCCGGCCCGTGAAATCAGAAGCCGATAATTATCAACTTCTCGCCCGCCATCAGGTTGCGTTCGATCTGTTCCACCGTCACATCTTTGGTTTCAGGAATCAGCCAGTAAGTAATGCCCACAACAGCAATgcgccgc > 2:618394/1‑137 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTGCTCGCCTGCCATCAGTTTGCGGTCGATATGTTCCAGCGTGGCATTTTTGGGTTCCGGAGTGAGCCAGAAAGTAAGGCCCACAAACGCAACGTTCAgcgc > 2:73345/1‑143 (MQ=255) | AGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGC > NC_000913/2980602‑2980886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |