Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 595,519 | T→A | 23.8% | intergenic (‑76/‑81) | cusR ← / → cusC | DNA‑binding transcriptional activator CusR/copper/silver export system outer membrane channel |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 595,519 | 0 | T | A | 23.8% | 56.7 / 16.2 | 37 | intergenic (‑76/‑81) | cusR/cusC | DNA‑binding transcriptional activator CusR/copper/silver export system outer membrane channel |
Reads supporting (aligned to +/- strand): ref base T (13/15); new base A (6/3); total (19/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.47e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.85e-01 |
TTCGGTTAACCCTTTGGTCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCGGTTGTTCACT > NC_000913/595378‑595658 | ttCGGTTAACCCTTTGGTCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGGTCAGATGGCAATCGCTTATTGGCCAAATGACAAtt > 1:242337/1‑143 (MQ=255) cGGTTAACCTTTTGGTCGAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAGCAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAtttt < 2:468311/143‑1 (MQ=255) cGGTTAACCCTTTGGTCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCCTATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAtttt < 2:739376/143‑1 (MQ=255) ggTTAACCCTTTGATCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACACTCAACAGTTTCATCTTTCCTCCGCCTGTTGCCCCGGCCATTCTCGAGTAGACGTATCAGATGGCAATCCCGCATTAGCAAAATGCCAAttacg > 2:802507/1‑140 (MQ=255) ttAACCCTTTGGTCACGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGATTCATATTTCATCAGCATATTGCTCGACCTATTCTAGAACAGCGAGCTCATGTGGCAAGCGCATAGTGGCGGAATGACAAATTTGtg > 2:789585/1‑142 (MQ=255) ccTTTGGTCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATGAACAGTGTCCAAAATCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAtttt < 1:417869/143‑1 (MQ=255) ccTTTGGTCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAtttt < 2:151701/143‑1 (MQ=255) cTTTTGTCAAGTATTCTCCCGTTTTCCTCTCATCTCCGACAATCAACAGTTTCATATTTCCCCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAttttg < 1:259041/143‑2 (MQ=255) cTTTAGTCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCAttttt < 2:318502/143‑1 (MQ=255) tCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTGTTCTGTCa > 1:321238/1‑143 (MQ=255) ttCTCCGGTTTTCTTGTCATCTGCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGaaa < 2:660671/143‑1 (MQ=255) tcCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGCTCAGATGGCAACCGCTTCTTGGCAAAATGGCAATTTTGTCATTTTTCTGTTACCGGGAAGTc > 2:383022/1‑143 (MQ=255) cctgTTTGCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCa < 1:358871/140‑1 (MQ=255) ggTTGTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCaga < 1:223365/143‑1 (MQ=255) gTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGGAGCGGCACCAGCTGGCATGCTCTTAGTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCagag < 1:621901/143‑1 (MQ=255) ttcATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAACATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGa > 1:322960/1‑143 (MQ=255) tCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCCATCGCCTATTGGCAAAATGACAATTTTGTCATTTTTCTATCACCGGAAAATCAGAGCCTGGCGAGtca > 2:123969/1‑141 (MQ=255) cTTCGACAATCAACTGTTTCATATTCCCTACGCATGTTGTACGTGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTaaa < 2:400025/143‑1 (MQ=255) ttCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACCATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAg > 1:166644/1‑143 (MQ=255) cAAGCAACAGTTGCATATTGCCTCCGCATGTTGCCCGGGCAATGCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTggc < 1:441031/143‑1 (MQ=255) atTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAAGCACCAg > 1:790768/1‑143 (MQ=255) tccGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAATGTGTCATTTTTCTGTCCCCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCAACAGAAAtac > 2:718606/1‑141 (MQ=255) ccGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTAGCGGCATAAAATCACCAGAAATTAt > 1:354518/1‑143 (MQ=255) cATGGTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAg < 1:136538/143‑1 (MQ=255) ggCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGGAATTATGAGCCTATGTCTcc > 1:450075/1‑143 (MQ=255) tcgagagTAGCGGGTTCAGACGGCAAATGTTTATTGGCAAAGAATAAATTTTGTCATTTTTCTGTCACCTGCAAATGAGAGCGTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTaa < 2:787160/140‑1 (MQ=255) tCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTaa < 1:638982/143‑1 (MQ=255) tAGAGTAGCGGGAGCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAAc < 1:66082/143‑1 (MQ=255) gATCAGATGGCAATCGCTTATTGGCAACACGACAATTAAGTCATGTGTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGACTATGTCTCCTTGTCAACGTCTGCCActt > 1:172836/1‑143 (MQ=255) gATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGACACTAACCATTGATTTTGGCGGTATTAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTtgtgt < 1:668481/143‑1 (MQ=255) aTGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTtgtgtg > 1:121782/1‑143 (MQ=255) gCAACCGCTTATCGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGcc < 2:696250/143‑1 (MQ=255) gCTTAGTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTgcg < 1:804800/143‑1 (MQ=255) agaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAACGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCg > 2:450381/4‑143 (MQ=255) agaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCCTGCGCTAACCg > 2:183607/4‑143 (MQ=255) agaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGGAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCg > 1:522744/4‑143 (MQ=255) aaaaTGATAATTTTTTCATTTTTCTGTCACAGTAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCGgtt < 1:38676/143‑1 (MQ=255) aaaaTGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTACACTTCTGCCATTTTGTGTGGCCCTTGCCCTAACCggct > 2:631447/1‑141 (MQ=255) aaaTGGCAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCGgttg > 1:585233/1‑143 (MQ=255) aTGACAAAATTGTCATTTTTCTGTCACCGTAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTCTGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCCCTAACCGgttgtt > 2:555375/1‑143 (MQ=255) cAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCGGTTGTTCACt > 1:135460/1‑143 (MQ=255) | TTCGGTTAACCCTTTGGTCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCGGTTGTTCACT > NC_000913/595378‑595658 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |