Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,884,437 | T→A | 10.5% | R34R (CGT→CGA) | rpmH → | 50S ribosomal subunit protein L34 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,884,437 | 0 | T | A | 10.5% | 102.9 / 5.2 | 48 | R34R (CGT→CGA) | rpmH | 50S ribosomal subunit protein L34 |
Reads supporting (aligned to +/- strand): ref base T (14/27); new base A (3/2); total (18/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.43e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.64e-01 |
AGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCCACAACGGGCT > NC_000913/3884299‑3884576 | aGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTg < 1:669945/143‑1 (MQ=255) cATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTa > 1:70499/1‑143 (MQ=255) ttGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCATCCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCTTGCTCGTATGGCCACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTaaa < 2:676070/143‑1 (MQ=255) ttGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGGCGTCAGGTTCTGGCACGTCGTCGTgatcca > 2:759542/1‑138 (MQ=255) gAATTTCTTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGACGACGTGccagaac < 2:154780/143‑7 (MQ=255) gAACTTAGTCAAGGTTGGGGAGACATCGCCATGAAGCGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCGTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGACGACGTGccagaac < 2:841792/143‑7 (MQ=255) ttaagcAAGTTTAAGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACAGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCcgc < 2:102243/138‑1 (MQ=255) ttATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTCTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCcgc < 1:147416/143‑1 (MQ=255) ttCAAGTTTAGGTAGAAATCGCCATGACACACACTTTTCAACCGTCTGTACTGACGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGTCTCCTATAAATCGTCGTCAAGATCAGACACATCGTAGTGCTAAAGACAGCGCt > 1:38093/1‑143 (MQ=255) tCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTAGTGCTAAAGGCCGCGCtg > 2:606286/1‑142 (MQ=255) tAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCACAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGtt > 1:300109/1‑143 (MQ=255) gAAATCGCCATGAACCGCCCTTTTCAACCGTCCGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTc < 2:486900/143‑1 (MQ=255) atggCCATGGAACGCACTTTCCAACCGTCTGTACTGAAGCGCAGCCGTTCTCACGGCTTCCGGGCTCGTATGGCTACTAAAAGTGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTaa < 1:27788/140‑1 (MQ=255) cATGAAACGCACTTTGCAACCGTCTGTACTGAAGCGCAACCGTTCGCAAGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTGGTCGTGCTAAAGACCGCGCTCGTGTGAACGTTTCTAAGgaat > 2:240257/1‑143 (MQ=255) tGACACGCACTTGTGAACCGTCTTTACTGAAGCGCAACGGTTGTCACGTCTTCCGTGCTCGTATGGCTACTAAAAATGGTGGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGtaataa < 2:32835/143‑1 (MQ=255) acaCGCACTTTTCAGCCGGCTGGAGTGATGCGCCTCCGTTCGCACGGCTTCCGTGGTCGTATGGCTACTCAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAg < 2:734813/141‑1 (MQ=255) aaaCGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAg < 1:680244/143‑1 (MQ=255) aaaCGCACGTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAg < 1:582318/143‑1 (MQ=255) gCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTCGTCGTATCCCTACCAAAAATGACCCTCCGGTCCCGGCACGAGGCCCAGCTAAAGGCCGCACCCGTCCGACCGTTGTCAAGTAAAAAAGCaaa > 2:379018/1‑143 (MQ=255) cTTTTCACACTTCTGTAGTGAGGCGCATCCGTTCGCTTGGCTGCCGTGCTCGTATGGCTACTAAGAATGGTCGTCCGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAAccc < 2:301657/143‑1 (MQ=255) tttCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCt < 1:509860/143‑1 (MQ=255) tACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAGAATGCTCGTCAGGTTTTGGCCTCTTGACGTGGTAAAGAAGGTATACGTCTCACCGTGGCGACGTACTAAAGCTAACCCCGGAGTggcgagtct > 2:888996/1‑136 (MQ=255) tACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGATACTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCt > 1:103097/1‑143 (MQ=255) tGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCCTCGTGCTAAAGGCCGCGCTCGTCAGACCGTGTGTAAGTACTAACGCTAACGCCTGACTTGTTAAGCACGc > 2:120805/1‑143 (MQ=255) cAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTccc > 2:251145/1‑143 (MQ=255) gTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCCGGTTCTGGCACGTCGTCGTGCTAACGGCCGCGCTCGTCTGACCGTTACTAAGTCGGCAAGCTAGCCCCGCAGCGGCTAAGCCCGCCTCTCCCaccgc > 1:166201/1‑139 (MQ=255) tcACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTa < 2:253919/143‑1 (MQ=255) aCGGCTTCCTTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGCCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTACGCTCGCATTTCCCAGGGAGATAcc > 2:449198/1‑142 (MQ=255) aCGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACg > 1:774271/1‑143 (MQ=255) cGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGc < 2:461330/143‑1 (MQ=255) ggCTTCCGTGCTCGCATGGCTACTAAAAATGGTCGTCAGGTTCGGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCt < 1:759542/143‑1 (MQ=255) gCTTCCGTGCTCTTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTAATACTACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCtt < 1:818406/143‑1 (MQ=255) ttCCGGTCTCTTATGGCTACTAAAAATGGTCGTCAGGTTCTTGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAATCCCTGAGTGGTTTAGCTCGCATTTCCCAGGGAGTTACGCTTGt < 2:110848/143‑1 (MQ=255) tgccagccTCGTATGCCTACTAATAATGGTCGTCAGGTTCTGGCACGTCGGCATGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTCACCCCTTAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGt < 2:588698/136‑1 (MQ=255) tGCTCGTATGGGTACTAAAAATGGTGGTCAGGTTCTGGCCCGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACt < 2:824619/143‑1 (MQ=255) cggaTGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCa < 2:85634/140‑1 (MQ=255) cGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCa < 1:739503/143‑1 (MQ=255) cGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCa < 1:160247/143‑1 (MQ=255) ctgctaAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAAtt < 1:532210/140‑1 (MQ=255) tactaAAAATGGTCGTCAGGTTCTGGCACGTCGTCACGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTc < 1:812559/143‑1 (MQ=255) gcctaCAAAGGGTGGGCAGGTGTTGGCACGTCGTATTATTCAACGCTTCTCTCGTCTGACCGTTTCTAAGTAATAACGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTc < 2:399460/141‑1 (MQ=255) taACAATGTTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCACTCGTCTGACCGTTCCTAAGTAATAAAGCTAACCCCTCAGTGGTTAAGCTCGCATTTCCCAGAGACTTACGCTCGTTGACCACCAGGCAATTcacc > 2:852991/1‑142 (MQ=255) taAAAATGGTCGTCAGGTTGTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTCTCTGAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGCGTTACGCTTGTTAACTCCCAGTCAATTcacc > 2:196039/1‑142 (MQ=255) acaagggTCGTCAGGTTCTGGCACGTCGTCGTGCGAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACAtt < 2:573178/138‑1 (MQ=255) gtcAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCca < 1:649222/143‑1 (MQ=255) ctttagCACGACGACGTGCTAAAGGCCGCGCCCGTCTGTCCGCTACTAAGTAATAAAGCTAACCCCTGAGGGGTTAAGCGCGCATTTCCCAGGGAGGTACGCTTGTTACCTCCGAGTCAATGCACATTCGTCTTCCAGCAGcc > 2:650337/6‑143 (MQ=255) tttagCACGACGACGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTACGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCca > 1:596878/5‑143 (MQ=255) aCGTCGTCGTGCTAGAGGCCGCGCTCGTCTGCCCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCCACAACgg < 2:807473/143‑1 (MQ=255) tcgtcgtGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCCACAACGGGCt < 2:300109/143‑1 (MQ=255) | AGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCCACAACGGGCT > NC_000913/3884299‑3884576 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |