| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,380 | 1 | . | C | 92.5% | 104.5 / 2.8 | 41 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base C (13/24); total (14/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 4,296,380 | 2 | . | G | 92.5% | 105.8 / 2.8 | 41 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base G (13/24); total (14/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TA‑‑C‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGC > NC_000913/4296303‑4296511 || aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGt > 2:601975/1‑143 (MQ=12) aCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGtt < 1:745986/143‑1 (MQ=12) cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGCTTCATGTA‑TTCTGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg < 1:524461/143‑1 (MQ=11) gcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCGTATCAGGCCTATCTTAACCGTTgg > 1:723134/1‑143 (MQ=255) tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTa > 2:834168/1‑143 (MQ=255) tttATCGGGCCTCCGCCGGCCGGCGCCTTAGCCTGATTTAGCGTGATT‑TTGTTGGTCGGATAAGGC‑‑GTT‑‑TACTC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTaa < 2:1060131/142‑1 (MQ=14) ttATCGGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAt < 2:337903/143‑1 (MQ=255) aGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc > 1:1010962/1‑143 (MQ=255) tgtcTACGCGAGACAGCGGAACCGCCTGAGATATCCTGATT‑TTTCAGCGCGGATAAGGCGGGCC‑‑CG‑‑C‑C‑GCTTCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCa < 2:380593/140‑1 (MQ=9) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 1:515427/143‑1 (MQ=255) ccTGCGCCAGGCAGCGGAATGGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TATGC‑C‑GCATCCGACATCACTGGATGGTGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa < 2:241292/143‑1 (MQ=17) ccTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa < 1:106391/143‑1 (MQ=255) tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAct < 2:592024/143‑1 (MQ=255) tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGATGGTTACTCTTCCAAAct > 2:539450/1‑143 (MQ=11) tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GGT‑‑TA‑‑CGCGGCATCTGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTACCCGGTGGTTAATTTTTccatct > 1:105467/1‑138 (MQ=14) gCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGCCGCTTGCCGCGTCTTCTCAGGCCTATCTTAAGCGTTGGTTACCTGTTCACActctc > 1:941584/1‑142 (MQ=11) ccAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc < 1:405512/143‑1 (MQ=255) ccAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc < 1:761596/143‑1 (MQ=255) aGCGCAATAGCCTGATTTGGCGTGATT‑TAGAAGGTCTGGTAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAccc < 2:800519/143‑1 (MQ=17) aGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAccc < 1:780534/143‑1 (MQ=255) aGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAccc > 1:1000682/1‑143 (MQ=255) gcgcAAGAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCg < 1:1115600/143‑1 (MQ=255) cagtgcccTGATTGAGCGTGATT‑TTGTAGGCCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTa < 2:268009/137‑1 (MQ=18) cAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTa > 1:1060100/1‑143 (MQ=255) aaTAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTAt < 1:282606/143‑1 (MQ=255) gCCTGATTGAGCGTCATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa < 1:1133606/143‑1 (MQ=18) cTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAcc < 1:864987/143‑1 (MQ=255) cTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAcc < 2:292956/143‑1 (MQ=255) ctttCGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCtt < 2:838111/142‑1 (MQ=255) tttAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCCCACCCGCTATCAACCCCTTc > 1:186022/1‑143 (MQ=18) tttAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTc < 2:565095/143‑1 (MQ=255) cGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATAc < 2:263595/143‑1 (MQ=255) tgatggtgtgGGTCGGATAAGGC‑‑GTTGCCG‑‑C‑C‑GCATCCGACATCAAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGGTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAg < 2:12583/137‑1 (MQ=21) gTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc < 2:183061/99‑1 (MQ=17) gTAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc > 1:183061/1‑99 (MQ=17) tAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACTCTGCCATACTGCTCAGGtg > 1:361667/1‑142 (MQ=21) tAGGTCGGATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGtt < 1:752642/143‑1 (MQ=255) ggATAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCa < 1:993080/143‑1 (MQ=255) aTAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACACCTCAGGTTCAAcctct > 1:491521/1‑140 (MQ=25) tAAGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTg < 1:476120/143‑1 (MQ=255) aaGGC‑‑GTT‑‑TACGC‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAACCGGTATCAAACCCTTCCATGCAGCTTTGGTTCGAGCAGTGc > 1:788157/1‑143 (MQ=21) || AACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATT‑TTGTAGGTCGGATAAGGC‑‑GTT‑‑TA‑‑C‑C‑GCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGC > NC_000913/4296303‑4296511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |