Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1050545NA (NA)59 (0.950) 48/282 0.2 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)74 (1.190) 62/282 0.0 100% intergenic (‑110/‑495) hns/tdk DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 133 total aligned reads displayed.

TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACG  >  NC_000913/1292897‑1293177
                                                                                                                                              |                                                                                                                                          
ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCGCACTTATCTTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgccg                                                                                                                                            >  2:930072/1‑143 (MQ=255)
 tCAGAATTTTACGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGg                                                                                                                                           >  2:359441‑M2/1‑142 (MQ=255)
  tccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTgtgccggc                                                                                                                                          <  1:1039046‑M1/10‑3 (MQ=255)
   aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggt                                                                                                                                         <  1:913195‑M2/143‑4 (MQ=255)
   aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTCTATTTGGTGCCGggt                                                                                                                                         <  2:383211‑M2/143‑4 (MQ=255)
    cggcggtgcttttgccgttacggaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaa                                                                                                                                        >  2:650211‑M1/132‑143 (MQ=255)
      gttttaTGTGCTGCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                      >  2:389060‑M2/2‑137 (MQ=255)
            cttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATc                                                                                                                                <  1:802174‑M1/20‑1 (MQ=255)
             ttttgccgttacgcaccaccccgtcagtagctgaacaggagagacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagaatcagcATGTGCCtctaatatataaaa                                                                                                                               <  1:1123634‑M1/21‑4 (MQ=255)
              tttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCtt                                                                                                                              <  1:763854‑M1/22‑1 (MQ=255)
                 ttCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCACAATTGTTCTTTATTTTGTGCCGggtaatgactccaactt                                                                                                                           <  1:498406‑M2/143‑18 (MQ=255)
                 ttCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactt                                                                                                                           <  1:406332‑M2/143‑18 (MQ=255)
                 gccgttatggaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTc                                                                                                                           >  2:302734‑M1/119‑143 (MQ=255)
                 gccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagctactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTc                                                                                                                           >  2:301601‑M1/119‑143 (MQ=255)
                  tCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactta                                                                                                                          >  1:916516‑M2/1‑125 (MQ=255)
                   cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCAt                                                                                                                         <  1:679347‑M1/27‑1 (MQ=255)
                   cGTTCATTGTAGTAATCTTAAATTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttat                                                                                                                         >  1:330864‑M2/1‑124 (MQ=255)
                     ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaa                                                                                                                       <  1:564279‑M1/29‑1 (MQ=255)
                      tCAGTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattga                                                                                                                      >  1:354993‑M2/1‑121 (MQ=255)
                      ccaTTGAAGTAATCCCAAACTTGTATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattga                                                                                                                      >  2:720007‑M2/2‑121 (MQ=255)
                       acgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaaaa                                                                                                                     >  1:558245‑M1/113‑143 (MQ=255)
                           accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCGTTTCATAAAATTAg                                                                                                                 <  1:1106371‑M1/35‑1 (MQ=255)
                            tagtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGTCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgt                                                                                                                >  2:379523‑M2/1‑115 (MQ=255)
                             agtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtt                                                                                                               <  1:869473‑M2/143‑30 (MQ=255)
                              accccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCa                                                                                                              >  1:631315‑M1/106‑143 (MQ=255)
                               taATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtttt                                                                                                             <  2:1083905‑M2/143‑32 (MQ=255)
                                cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGa                                                                                                            <  1:561345‑M1/40‑1 (MQ=255)
                                cccgtcagtagctgaacaggaaggacagctgatagaaacagaagccactggagcacctcaaaaacaccagcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTGTGCATAAAATTAGCCAGa                                                                                                            <  2:526945‑M1/40‑1 (MQ=255)
                                aaTCTCCAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtttta                                                                                                            >  1:133057‑M2/1‑111 (MQ=255)
                                    tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTACATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggcaatgactccaacttattgctagtgttttatgtt                                                                                                        <  2:106713‑M2/143‑37 (MQ=255)
                                    tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtactgactccaacttattgatagtgttttatgtt                                                                                                        <  1:772853‑M2/143‑37 (MQ=255)
                                    tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcctgctttttgatagtgttttatgtt                                                                                                        <  1:322591‑M2/143‑37 (MQ=255)
                                     cagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGa                                                                                                       >  1:441504‑M1/99‑143 (MQ=255)
                                           ctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagcaagttggcagcatcaccTTGTGCCGCCAATCAATATCTTTTCATACAATTAGCCAGAAAAGACGCGGc                                                                                                 <  2:1083033‑M1/51‑1 (MQ=255)
                                               ttGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                             >  1:491474‑M2/1‑96 (MQ=255)
                                                tGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgccc                                                                                            <  1:190878‑M2/143‑49 (MQ=255)
                                                caggaggtacagccgatagaaacagaagccactggagcacctcaaaaacaccatcatacactacatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCAtata                                                                                            >  2:550205‑M1/88‑143 (MQ=255)
                                                 aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAg                                                                                           >  1:679014‑M1/87‑143 (MQ=255)
                                                   gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaactccgtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGcc                                                                                         >  2:12098‑M1/85‑143 (MQ=255)
                                                       gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGACACGACGCGGCATATAGCCCtac                                                                                     <  2:1038150‑M1/63‑2 (MQ=255)
                                                        acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAACTATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAtt                                                                                    <  2:744654‑M1/64‑1 (MQ=255)
                                                         ttgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                   >  1:237286‑M2/1‑86 (MQ=255)
                                                         ttgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAGTTTGTGCCGggtaatgactccaacttcttgatagtgttttatgttccgataatgcccgatgacttt                                                                                   <  2:285276‑M2/143‑58 (MQ=255)
                                                         ggggtgaggtAATAAGAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                   >  1:273861‑M2/5‑86 (MQ=255)
                                                           gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTac                                                                                 <  2:952075‑M1/67‑1 (MQ=255)
                                                             tgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTGATTGTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca                                                                               >  2:554313‑M2/1‑82 (MQ=255)
                                                             tgAGGTAAGAATAGAGCCTTAAATTCAGTTGTGCAATAGCTAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGtgtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca                                                                               >  2:822217‑M2/1‑82 (MQ=255)
                                                               aGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAACCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaccttattgctagtgttttatgttcagatcctgcccgatgactttgtcatg                                                                             <  1:658387‑M2/143‑64 (MQ=255)
                                                                tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCga                                                                            >  2:217328‑M1/72‑143 (MQ=255)
                                                                gttaattataTAGCCTTATATTCAGTTGTGCCATGGTCAGGAATGTAAGGAATTCACAATTGTTTTTTATTTGGTTCCGggtaaggactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                                                            >  2:97962‑M2/3‑79 (MQ=255)
                                                                cgtAATACTAGATCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                                                            >  2:843686‑M2/2‑79 (MQ=255)
                                                                   aaacagaagccactggagcacctcaaaaacaccatcatacactagtacagaaaggtggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGACAGGACGCGGCATATCGCCCTATTTACCCGgatga                                                                         <  2:244067‑M1/75‑1 (MQ=255)
                                                                    ataataGAGCCTTAAATTCAGTTGTGCAATAGCGAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagct                                                                        <  1:470857‑M2/143‑69 (MQ=255)
                                                                    aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatgat                                                                        <  2:752502‑M1/76‑1 (MQ=255)
                                                                     acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAtt                                                                       <  1:176422‑M1/77‑1 (MQ=255)
                                                                         agagCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacc                                                                   >  1:802881‑M2/1‑70 (MQ=255)
                                                                         aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatccccTTGTGCCGCCAATAAATATATATTAATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTAAACAGATGATTTCgc                                                                   <  1:261860‑M1/81‑1 (MQ=255)
                                                                         aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgc                                                                   >  1:969746‑M1/63‑143 (MQ=255)
                                                                              cTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattt                                                              >  1:408592‑M2/1‑65 (MQ=255)
                                                                                        gTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgac                                                    >  1:751143‑M2/1‑55 (MQ=255)
                                                                                         tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTCCACCGATGATCTCGCAGCACGTGAGGTTaaa                                                   <  2:307260‑M1/97‑1 (MQ=255)
                                                                                         tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCAACTAACTATCGTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCCAAGCACGTGAGGTtaac                                                   <  2:1053576‑M1/97‑2 (MQ=255)
                                                                                           aaaagcaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAAc                                                 >  2:870299‑M1/45‑143 (MQ=255)
                                                                                             gCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtggtttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcga                                               >  1:507356‑M2/1‑50 (MQ=255)
                                                                                             aaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCCCGTGAGGCTAAAACtt                                               <  2:829172‑M1/101‑1 (MQ=255)
                                                                                              aacaccatcatacactgaatcagtaagttggcagcatcaccTTGTGCCGCCAATATATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                              >  1:1019468‑M1/42‑143 (MQ=255)
                                                                                               aaTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacg                                             <  2:35951‑M2/143‑96 (MQ=255)
                                                                                               aaTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagcgccaccgcttctgagaccgacagcgaaa                                             <  2:882759‑M2/143‑96 (MQ=255)
                                                                                                aTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                            >  1:397087‑M2/1‑47 (MQ=255)
                                                                                                 accatcatacactaaatcagtaagttggtagcatcactTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTg                                           >  1:88297‑M1/39‑143 (MQ=255)
                                                                                                  aGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttcc                                          >  1:471650‑M2/1‑45 (MQ=255)
                                                                                                   catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCACCACGTGAGGTTAAAACTtcctcat                                         <  2:794341‑M1/107‑4 (MQ=255)
                                                                                                        tacactaaatccgtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATg                                    >  2:851114‑M1/32‑143 (MQ=255)
                                                                                                         acactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATGAATCTTTTTGCCTAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                                   >  1:258879‑M1/31‑143 (MQ=255)
                                                                                                          aTGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagctactgcccgatgactttgtcctgcagctccaccgattttgagaacgacagcgacttccgtcagagc                                  <  1:276457‑M2/143‑107 (MQ=255)
                                                                                                             taaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTCTTTACACCGATGATTTCGCAGCACGTGCGGTTACACCTTCCTGATTCACGTcaca                               <  1:112510‑M1/117‑1 (MQ=255)
                                                                                                               aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc                             <  1:252838‑M2/143‑112 (MQ=255)
                                                                                                                ggAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcc                            >  2:406332‑M2/1‑31 (MQ=255)
                                                                                                                    ttCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggt                        <  1:857543‑M2/143‑117 (MQ=255)
                                                                                                                    gtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAt                              <  2:909467‑M1/118‑1 (MQ=255)
                                                                                                                    gtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAt                              >  1:909467‑M1/20‑137 (MQ=255)
                                                                                                                        gttggcagcatcaccTTGTGCCGCCAATCAATATCTTTTCATCAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGga                    >  1:453917‑M1/16‑143 (MQ=255)
                                                                                                                        aaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgacttagcgaacgacagagacttccgtcccagccgtgccaggtgctg                    <  1:304999‑M2/143‑121 (MQ=255)
                                                                                                                         ttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATAGAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAACCTTCCTGATTCATGTCACATTGTATGGGgag                   <  1:620021‑M1/129‑1 (MQ=255)
                                                                                                                         ttggcagcatcaccTCGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgag                   <  2:764007‑M1/129‑1 (MQ=255)
                                                                                                                           ggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGAt                 <  1:622024‑M1/131‑1 (MQ=255)
                                                                                                                             cagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAACCTTCCTGACTCATGTCCCCCTTTATGGGGAgataa               <  1:397857‑M1/133‑3 (MQ=255)
                                                                                                                               gcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATc             >  1:892076‑M1/9‑143 (MQ=255)
                                                                                                                                 tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt           <  1:104147‑M2/143‑130 (MQ=255)
                                                                                                                                  tcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCCTGTCACATTTTATGGGGAGATTATCGTa          >  2:407145‑M1/6‑143 (MQ=255)
                                                                                                                                  tcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTa          >  1:244067‑M1/6‑143 (MQ=255)
                                                                                                                                  ctaTCTTGTGCCGggtaatgacccaaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattc          >  1:235095‑M2/2‑13 (MQ=255)
                                                                                                                                   tATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattca         >  1:930072‑M2/1‑12 (MQ=255)
                                                                                                                                   caccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgggg                     <  1:467844‑M1/127‑1 (MQ=255)
                                                                                                                                   caccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgggg                     >  2:467844‑M1/5‑131 (MQ=255)
                                                                                                                                    acggtgtgCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATGTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAgg        <  1:792039/139‑1 (MQ=255)
                                                                                                                                    accTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAgg        >  1:1042774‑M1/4‑143 (MQ=255)
                                                                                                                                    accGTGTGCCGCGAATAAGTATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGAGGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAgg        >  2:664232‑M1/4‑143 (MQ=255)
                                                                                                                                      cTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTCCACCTATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCt      <  2:858550‑M1/142‑1 (MQ=255)
                                                                                                                                          tgCCGggaataactccaactttttgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatac  >  2:345156‑M2/1‑5 (MQ=255)
                                                                                                                                              |                                                                                                                                          
TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACG  >  NC_000913/1292897‑1293177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.